miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12421 3' -55.5 NC_003324.1 + 50782 0.8 0.090803
Target:  5'- cGUCGACGGCGAcGGCAAUGCUGCcacaccggAGCa -3'
miRNA:   3'- -UAGCUGCCGUU-CCGUUGUGACG--------UCGa -5'
12421 3' -55.5 NC_003324.1 + 43189 0.74 0.220669
Target:  5'- cUCGACgaaGGCAAGGCGcacccacgucuucCACUGCAGCg -3'
miRNA:   3'- uAGCUG---CCGUUCCGUu------------GUGACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 54043 0.74 0.254656
Target:  5'- gAUUGGCGcGCAgAGGCuuuCGCUGCGGCg -3'
miRNA:   3'- -UAGCUGC-CGU-UCCGuu-GUGACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 16815 0.73 0.28179
Target:  5'- -gUGACGGCAagcaucaAGGCGGCACUGguGa- -3'
miRNA:   3'- uaGCUGCCGU-------UCCGUUGUGACguCga -5'
12421 3' -55.5 NC_003324.1 + 26453 0.73 0.28543
Target:  5'- cAUCGACGGCAAugucGGCGACAucaauugcucgaccuCgGCAGCg -3'
miRNA:   3'- -UAGCUGCCGUU----CCGUUGU---------------GaCGUCGa -5'
12421 3' -55.5 NC_003324.1 + 1096 0.73 0.289847
Target:  5'- uUCGACGGCAAGGagaaGACGCUuGUcaucGGCa -3'
miRNA:   3'- uAGCUGCCGUUCCg---UUGUGA-CG----UCGa -5'
12421 3' -55.5 NC_003324.1 + 49532 0.71 0.362541
Target:  5'- uAUCGAgCGGCGAGGCGACG-UGCAu-- -3'
miRNA:   3'- -UAGCU-GCCGUUCCGUUGUgACGUcga -5'
12421 3' -55.5 NC_003324.1 + 24008 0.7 0.417592
Target:  5'- -gCGGCGGUAGGGCu--GCUGCGuGCg -3'
miRNA:   3'- uaGCUGCCGUUCCGuugUGACGU-CGa -5'
12421 3' -55.5 NC_003324.1 + 16164 0.69 0.457003
Target:  5'- cAUCGcUGGCAccgAGGCgGGCACcGCAGCUc -3'
miRNA:   3'- -UAGCuGCCGU---UCCG-UUGUGaCGUCGA- -5'
12421 3' -55.5 NC_003324.1 + 49051 0.69 0.495165
Target:  5'- -gCGGCGGCGGGGCAauccauccggcucuGCACcGgGGCc -3'
miRNA:   3'- uaGCUGCCGUUCCGU--------------UGUGaCgUCGa -5'
12421 3' -55.5 NC_003324.1 + 26720 0.68 0.519603
Target:  5'- -gCGACGcaGCAGGGCGcggGCcuuuuCUGCAGCa -3'
miRNA:   3'- uaGCUGC--CGUUCCGU---UGu----GACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 36503 0.67 0.574202
Target:  5'- -aUGGCGGUAGGGCGACGgcGaCAGCc -3'
miRNA:   3'- uaGCUGCCGUUCCGUUGUgaC-GUCGa -5'
12421 3' -55.5 NC_003324.1 + 38845 0.67 0.574202
Target:  5'- cGUCGGCGucccaccagcucGCGaaaugcAGGCGAUACUGCAgGCg -3'
miRNA:   3'- -UAGCUGC------------CGU------UCCGUUGUGACGU-CGa -5'
12421 3' -55.5 NC_003324.1 + 14598 0.67 0.607614
Target:  5'- -cCGGCGGCGcAGGCGguaGCgugGCGGCc -3'
miRNA:   3'- uaGCUGCCGU-UCCGUug-UGa--CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 18713 0.67 0.62329
Target:  5'- cAUCGACu-CGAGGUAACGCUGCcauaccugauccaucAGCUc -3'
miRNA:   3'- -UAGCUGccGUUCCGUUGUGACG---------------UCGA- -5'
12421 3' -55.5 NC_003324.1 + 22593 0.66 0.641223
Target:  5'- gAUCGGCGGCcuuuuGGCuGC-CUGCcGCg -3'
miRNA:   3'- -UAGCUGCCGuu---CCGuUGuGACGuCGa -5'
12421 3' -55.5 NC_003324.1 + 6465 1.05 0.00142
Target:  5'- aAUCGACGGCAAGGCAACACUGCAGCUc -3'
miRNA:   3'- -UAGCUGCCGUUCCGUUGUGACGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.