miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 29871 0.71 0.383902
Target:  5'- gUGaCAUCAGGcaGGGugGAUACGGCGc -3'
miRNA:   3'- gACgGUGGUCU--UCCugCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 15562 0.7 0.392686
Target:  5'- -cGCCgACCGGGuucagaaguGGGcCGACACGGCa- -3'
miRNA:   3'- gaCGG-UGGUCU---------UCCuGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 14809 0.7 0.398912
Target:  5'- -cGCgGCCGGcaucggcagcuuccuGGGCGGCAuCGGCGGa -3'
miRNA:   3'- gaCGgUGGUCuu-------------CCUGCUGU-GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 48814 0.7 0.419807
Target:  5'- gUGCCACCgAGGccaaugGGGGCGACGaGGUGa -3'
miRNA:   3'- gACGGUGG-UCU------UCCUGCUGUgCCGCc -5'
12422 5' -57.1 NC_003324.1 + 4719 0.7 0.419807
Target:  5'- -gGCUggaaauCCAGAAGG-CGGCugcuACGGCGGa -3'
miRNA:   3'- gaCGGu-----GGUCUUCCuGCUG----UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 29911 0.7 0.429096
Target:  5'- gCUGCUgGCCAuGcuGGACGGCGCGGCc- -3'
miRNA:   3'- -GACGG-UGGU-CuuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 25529 0.66 0.634128
Target:  5'- aUGCuCGCCaAGuGGGuCGGCugGgGCGGc -3'
miRNA:   3'- gACG-GUGG-UCuUCCuGCUGugC-CGCC- -5'
12422 5' -57.1 NC_003324.1 + 36416 0.66 0.644874
Target:  5'- -aGUCAUUAuGGAcGAUGGCGCGGUGGa -3'
miRNA:   3'- gaCGGUGGU-CUUcCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 30078 0.66 0.644874
Target:  5'- -cGUCGCCAGAgugcaccggccGGGAuCGAUGCGGaccCGGc -3'
miRNA:   3'- gaCGGUGGUCU-----------UCCU-GCUGUGCC---GCC- -5'
12422 5' -57.1 NC_003324.1 + 31318 0.66 0.644874
Target:  5'- gUGCgGCCGGcGGcGCuGGCGCuGGCGGg -3'
miRNA:   3'- gACGgUGGUCuUCcUG-CUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 23025 0.66 0.655608
Target:  5'- -cGCCACCGGA--GACuggGACGCGGUu- -3'
miRNA:   3'- gaCGGUGGUCUucCUG---CUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 6104 0.66 0.666322
Target:  5'- aUGUCGUCGGcAGGAgcgGACugGGCGGc -3'
miRNA:   3'- gACGGUGGUCuUCCUg--CUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 52456 0.66 0.677005
Target:  5'- uUGCCgcgGCCAGAcGGAUGcAUGCaGGCGa -3'
miRNA:   3'- gACGG---UGGUCUuCCUGC-UGUG-CCGCc -5'
12422 5' -57.1 NC_003324.1 + 35161 0.75 0.213557
Target:  5'- aUGCCACCGGAGauacGGGCGACAauGCa- -3'
miRNA:   3'- gACGGUGGUCUU----CCUGCUGUgcCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.