miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 10847 0.67 0.580552
Target:  5'- gUGCUuCCGGuGAGGAaGACuuGGCGGu -3'
miRNA:   3'- gACGGuGGUC-UUCCUgCUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 24259 0.68 0.52798
Target:  5'- uCUGCUgAUCAGAGGccuucucgucGAUcugGGCACGGCGGa -3'
miRNA:   3'- -GACGG-UGGUCUUC----------CUG---CUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 30741 0.68 0.52798
Target:  5'- cCUGCUGCuCGGGAGuGACGgaaGCACGggcGCGGu -3'
miRNA:   3'- -GACGGUG-GUCUUC-CUGC---UGUGC---CGCC- -5'
12422 5' -57.1 NC_003324.1 + 39591 0.68 0.52798
Target:  5'- -aGCCuCCGGAucGuccuCGACAgGGCGGa -3'
miRNA:   3'- gaCGGuGGUCUucCu---GCUGUgCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 47811 0.68 0.54778
Target:  5'- --cCCGCCGGAAGGAagacgaauaccUGACGCcuuaugaGGCGGc -3'
miRNA:   3'- gacGGUGGUCUUCCU-----------GCUGUG-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 2530 0.68 0.548828
Target:  5'- -cGCCACCGacgaacaggcGAcGGACGGCagACGGCa- -3'
miRNA:   3'- gaCGGUGGU----------CUuCCUGCUG--UGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 29911 0.7 0.429096
Target:  5'- gCUGCUgGCCAuGcuGGACGGCGCGGCc- -3'
miRNA:   3'- -GACGG-UGGU-CuuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 20785 0.74 0.248936
Target:  5'- --aCCGCCGGAAcguuGGCGAgGCGGCGGa -3'
miRNA:   3'- gacGGUGGUCUUc---CUGCUgUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 15116 0.73 0.296175
Target:  5'- aUGCCAUCGGucucGGcguCGACACGGCGc -3'
miRNA:   3'- gACGGUGGUCuu--CCu--GCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 29871 0.71 0.383902
Target:  5'- gUGaCAUCAGGcaGGGugGAUACGGCGc -3'
miRNA:   3'- gACgGUGGUCU--UCCugCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 15562 0.7 0.392686
Target:  5'- -cGCCgACCGGGuucagaaguGGGcCGACACGGCa- -3'
miRNA:   3'- gaCGG-UGGUCU---------UCCuGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 14809 0.7 0.398912
Target:  5'- -cGCgGCCGGcaucggcagcuuccuGGGCGGCAuCGGCGGa -3'
miRNA:   3'- gaCGgUGGUCuu-------------CCUGCUGU-GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 48814 0.7 0.419807
Target:  5'- gUGCCACCgAGGccaaugGGGGCGACGaGGUGa -3'
miRNA:   3'- gACGGUGG-UCU------UCCUGCUGUgCCGCc -5'
12422 5' -57.1 NC_003324.1 + 4719 0.7 0.419807
Target:  5'- -gGCUggaaauCCAGAAGG-CGGCugcuACGGCGGa -3'
miRNA:   3'- gaCGGu-----GGUCUUCCuGCUG----UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.