miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 6845 1.09 0.00076
Target:  5'- gCUGCCACCAGAAGGACGACACGGCGGc -3'
miRNA:   3'- -GACGGUGGUCUUCCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 35161 0.75 0.213557
Target:  5'- aUGCCACCGGAGauacGGGCGACAauGCa- -3'
miRNA:   3'- gACGGUGGUCUU----CCUGCUGUgcCGcc -5'
12422 5' -57.1 NC_003324.1 + 20785 0.74 0.248936
Target:  5'- --aCCGCCGGAAcguuGGCGAgGCGGCGGa -3'
miRNA:   3'- gacGGUGGUCUUc---CUGCUgUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 53010 0.74 0.248936
Target:  5'- aCUGUUuCCAGccAGGcGACGAUGCGGCGGa -3'
miRNA:   3'- -GACGGuGGUC--UUC-CUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 37246 0.73 0.261763
Target:  5'- cCUGCCGCggcgcaAGGAaGACGACAagcCGGCGGg -3'
miRNA:   3'- -GACGGUGg-----UCUUcCUGCUGU---GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 15116 0.73 0.296175
Target:  5'- aUGCCAUCGGucucGGcguCGACACGGCGc -3'
miRNA:   3'- gACGGUGGUCuu--CCu--GCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 46440 0.71 0.339573
Target:  5'- cCUGCuUACCgcuuuccaacugagAGAcGGACGACACGGCa- -3'
miRNA:   3'- -GACG-GUGG--------------UCUuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 10399 0.71 0.358345
Target:  5'- aCUGUUuCUAGGAgcGGAUGcACGCGGCGGa -3'
miRNA:   3'- -GACGGuGGUCUU--CCUGC-UGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 22305 0.71 0.366731
Target:  5'- uUGCCGCUcccGAAGGu--GCGCGGCGGc -3'
miRNA:   3'- gACGGUGGu--CUUCCugcUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 29871 0.71 0.383902
Target:  5'- gUGaCAUCAGGcaGGGugGAUACGGCGc -3'
miRNA:   3'- gACgGUGGUCU--UCCugCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 15562 0.7 0.392686
Target:  5'- -cGCCgACCGGGuucagaaguGGGcCGACACGGCa- -3'
miRNA:   3'- gaCGG-UGGUCU---------UCCuGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 14809 0.7 0.398912
Target:  5'- -cGCgGCCGGcaucggcagcuuccuGGGCGGCAuCGGCGGa -3'
miRNA:   3'- gaCGgUGGUCuu-------------CCUGCUGU-GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42394 0.7 0.419807
Target:  5'- uCUGUCACCGGcgcccGGcACGugGCaGGCGGc -3'
miRNA:   3'- -GACGGUGGUCuu---CC-UGCugUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 26225 0.7 0.419807
Target:  5'- -gGCCGCCAGcagcGGGACGAgaACGGuCGa -3'
miRNA:   3'- gaCGGUGGUCu---UCCUGCUg-UGCC-GCc -5'
12422 5' -57.1 NC_003324.1 + 4719 0.7 0.419807
Target:  5'- -gGCUggaaauCCAGAAGG-CGGCugcuACGGCGGa -3'
miRNA:   3'- gaCGGu-----GGUCUUCCuGCUG----UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 48814 0.7 0.419807
Target:  5'- gUGCCACCgAGGccaaugGGGGCGACGaGGUGa -3'
miRNA:   3'- gACGGUGG-UCU------UCCUGCUGUgCCGCc -5'
12422 5' -57.1 NC_003324.1 + 29911 0.7 0.429096
Target:  5'- gCUGCUgGCCAuGcuGGACGGCGCGGCc- -3'
miRNA:   3'- -GACGG-UGGU-CuuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.