miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 29871 0.71 0.383902
Target:  5'- gUGaCAUCAGGcaGGGugGAUACGGCGc -3'
miRNA:   3'- gACgGUGGUCU--UCCugCUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 15562 0.7 0.392686
Target:  5'- -cGCCgACCGGGuucagaaguGGGcCGACACGGCa- -3'
miRNA:   3'- gaCGG-UGGUCU---------UCCuGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 14809 0.7 0.398912
Target:  5'- -cGCgGCCGGcaucggcagcuuccuGGGCGGCAuCGGCGGa -3'
miRNA:   3'- gaCGgUGGUCuu-------------CCUGCUGU-GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 48814 0.7 0.419807
Target:  5'- gUGCCACCgAGGccaaugGGGGCGACGaGGUGa -3'
miRNA:   3'- gACGGUGG-UCU------UCCUGCUGUgCCGCc -5'
12422 5' -57.1 NC_003324.1 + 29911 0.7 0.429096
Target:  5'- gCUGCUgGCCAuGcuGGACGGCGCGGCc- -3'
miRNA:   3'- -GACGG-UGGU-CuuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 38264 0.69 0.44803
Target:  5'- -cGCCAUCAGGucGGGAguGCGCGGCa- -3'
miRNA:   3'- gaCGGUGGUCU--UCCUgcUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 4719 0.7 0.419807
Target:  5'- -gGCUggaaauCCAGAAGG-CGGCugcuACGGCGGa -3'
miRNA:   3'- gaCGGu-----GGUCUUCCuGCUG----UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 54895 0.68 0.52798
Target:  5'- cCUGCCggucucACCGcGA---ACGGCGCGGCGGu -3'
miRNA:   3'- -GACGG------UGGU-CUuccUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 53662 0.68 0.517666
Target:  5'- aUGUCGCaaAGggGGAcCGGCAUcaGGCGGc -3'
miRNA:   3'- gACGGUGg-UCuuCCU-GCUGUG--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 10697 0.69 0.497286
Target:  5'- -aGCCacgGCCAGcguuGGGCGACugGG-GGa -3'
miRNA:   3'- gaCGG---UGGUCuu--CCUGCUGugCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 11223 0.69 0.45767
Target:  5'- -gGCCGCCAGAccGGCGAaGCGGaccaaGGu -3'
miRNA:   3'- gaCGGUGGUCUucCUGCUgUGCCg----CC- -5'
12422 5' -57.1 NC_003324.1 + 28687 0.69 0.45767
Target:  5'- -gGCCAC---GAGGGCGACAgcgGGCGGa -3'
miRNA:   3'- gaCGGUGgucUUCCUGCUGUg--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 26225 0.7 0.419807
Target:  5'- -gGCCGCCAGcagcGGGACGAgaACGGuCGa -3'
miRNA:   3'- gaCGGUGGUCu---UCCUGCUg-UGCC-GCc -5'
12422 5' -57.1 NC_003324.1 + 42394 0.7 0.419807
Target:  5'- uCUGUCACCGGcgcccGGcACGugGCaGGCGGc -3'
miRNA:   3'- -GACGGUGGUCuu---CC-UGCugUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 22305 0.71 0.366731
Target:  5'- uUGCCGCUcccGAAGGu--GCGCGGCGGc -3'
miRNA:   3'- gACGGUGGu--CUUCCugcUGUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.