Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12422 | 5' | -57.1 | NC_003324.1 | + | 50284 | 0.69 | 0.44803 |
Target: 5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3' miRNA: 3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 45959 | 0.69 | 0.477275 |
Target: 5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3' miRNA: 3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 28687 | 0.69 | 0.45767 |
Target: 5'- -gGCCAC---GAGGGCGACAgcgGGCGGa -3' miRNA: 3'- gaCGGUGgucUUCCUGCUGUg--CCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 11223 | 0.69 | 0.45767 |
Target: 5'- -gGCCGCCAGAccGGCGAaGCGGaccaaGGu -3' miRNA: 3'- gaCGGUGGUCUucCUGCUgUGCCg----CC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 10697 | 0.69 | 0.497286 |
Target: 5'- -aGCCacgGCCAGcguuGGGCGACugGG-GGa -3' miRNA: 3'- gaCGG---UGGUCuu--CCUGCUGugCCgCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 18453 | 0.69 | 0.486232 |
Target: 5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3' miRNA: 3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 24259 | 0.68 | 0.52798 |
Target: 5'- uCUGCUgAUCAGAGGccuucucgucGAUcugGGCACGGCGGa -3' miRNA: 3'- -GACGG-UGGUCUUC----------CUG---CUGUGCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 30741 | 0.68 | 0.52798 |
Target: 5'- cCUGCUGCuCGGGAGuGACGgaaGCACGggcGCGGu -3' miRNA: 3'- -GACGGUG-GUCUUC-CUGC---UGUGC---CGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 39591 | 0.68 | 0.52798 |
Target: 5'- -aGCCuCCGGAucGuccuCGACAgGGCGGa -3' miRNA: 3'- gaCGGuGGUCUucCu---GCUGUgCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 47811 | 0.68 | 0.54778 |
Target: 5'- --cCCGCCGGAAGGAagacgaauaccUGACGCcuuaugaGGCGGc -3' miRNA: 3'- gacGGUGGUCUUCCU-----------GCUGUG-------CCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 2530 | 0.68 | 0.548828 |
Target: 5'- -cGCCACCGacgaacaggcGAcGGACGGCagACGGCa- -3' miRNA: 3'- gaCGGUGGU----------CUuCCUGCUG--UGCCGcc -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 53662 | 0.68 | 0.517666 |
Target: 5'- aUGUCGCaaAGggGGAcCGGCAUcaGGCGGc -3' miRNA: 3'- gACGGUGg-UCuuCCU-GCUGUG--CCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 54895 | 0.68 | 0.52798 |
Target: 5'- cCUGCCggucucACCGcGA---ACGGCGCGGCGGu -3' miRNA: 3'- -GACGG------UGGU-CUuccUGCUGUGCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 32415 | 0.68 | 0.538369 |
Target: 5'- aUGCCGCUAGGcaggccaugcAGGAUccggaGAUGCGGCGc -3' miRNA: 3'- gACGGUGGUCU----------UCCUG-----CUGUGCCGCc -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 31771 | 0.67 | 0.566748 |
Target: 5'- -cGUCACCAGcacGGGGauGCGGCcgaucucggauggaACGGCGGc -3' miRNA: 3'- gaCGGUGGUC---UUCC--UGCUG--------------UGCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 10847 | 0.67 | 0.580552 |
Target: 5'- gUGCUuCCGGuGAGGAaGACuuGGCGGu -3' miRNA: 3'- gACGGuGGUC-UUCCUgCUGugCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 22787 | 0.67 | 0.601917 |
Target: 5'- -cGCCACUucguGAGcuGGGCGACGuuGCGGc -3' miRNA: 3'- gaCGGUGGu---CUU--CCUGCUGUgcCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 2686 | 0.67 | 0.612641 |
Target: 5'- -gGCCGCUucGGcAAGGgcACGAUgucgGCGGCGGc -3' miRNA: 3'- gaCGGUGG--UC-UUCC--UGCUG----UGCCGCC- -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 19846 | 0.67 | 0.55935 |
Target: 5'- aUGCCGCCGG-GGGACGcgaACAgacCGGCc- -3' miRNA: 3'- gACGGUGGUCuUCCUGC---UGU---GCCGcc -5' |
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12422 | 5' | -57.1 | NC_003324.1 | + | 1574 | 0.67 | 0.55935 |
Target: 5'- -gGCCcgGCCGGAAGcaaugccauaGACGAagAUGGCGGa -3' miRNA: 3'- gaCGG--UGGUCUUC----------CUGCUg-UGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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