miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 10847 0.67 0.580552
Target:  5'- gUGCUuCCGGuGAGGAaGACuuGGCGGu -3'
miRNA:   3'- gACGGuGGUC-UUCCUgCUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 40547 0.67 0.569927
Target:  5'- gCUGCUucCCAGAAGcGGaGACACugauGGCGGc -3'
miRNA:   3'- -GACGGu-GGUCUUC-CUgCUGUG----CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 31771 0.67 0.566748
Target:  5'- -cGUCACCAGcacGGGGauGCGGCcgaucucggauggaACGGCGGc -3'
miRNA:   3'- gaCGGUGGUC---UUCC--UGCUG--------------UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 1574 0.67 0.55935
Target:  5'- -gGCCcgGCCGGAAGcaaugccauaGACGAagAUGGCGGa -3'
miRNA:   3'- gaCGG--UGGUCUUC----------CUGCUg-UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 19846 0.67 0.55935
Target:  5'- aUGCCGCCGG-GGGACGcgaACAgacCGGCc- -3'
miRNA:   3'- gACGGUGGUCuUCCUGC---UGU---GCCGcc -5'
12422 5' -57.1 NC_003324.1 + 2530 0.68 0.548828
Target:  5'- -cGCCACCGacgaacaggcGAcGGACGGCagACGGCa- -3'
miRNA:   3'- gaCGGUGGU----------CUuCCUGCUG--UGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 47811 0.68 0.54778
Target:  5'- --cCCGCCGGAAGGAagacgaauaccUGACGCcuuaugaGGCGGc -3'
miRNA:   3'- gacGGUGGUCUUCCU-----------GCUGUG-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 32415 0.68 0.538369
Target:  5'- aUGCCGCUAGGcaggccaugcAGGAUccggaGAUGCGGCGc -3'
miRNA:   3'- gACGGUGGUCU----------UCCUG-----CUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 39591 0.68 0.52798
Target:  5'- -aGCCuCCGGAucGuccuCGACAgGGCGGa -3'
miRNA:   3'- gaCGGuGGUCUucCu---GCUGUgCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 30741 0.68 0.52798
Target:  5'- cCUGCUGCuCGGGAGuGACGgaaGCACGggcGCGGu -3'
miRNA:   3'- -GACGGUG-GUCUUC-CUGC---UGUGC---CGCC- -5'
12422 5' -57.1 NC_003324.1 + 24259 0.68 0.52798
Target:  5'- uCUGCUgAUCAGAGGccuucucgucGAUcugGGCACGGCGGa -3'
miRNA:   3'- -GACGG-UGGUCUUC----------CUG---CUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 54895 0.68 0.52798
Target:  5'- cCUGCCggucucACCGcGA---ACGGCGCGGCGGu -3'
miRNA:   3'- -GACGG------UGGU-CUuccUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 53662 0.68 0.517666
Target:  5'- aUGUCGCaaAGggGGAcCGGCAUcaGGCGGc -3'
miRNA:   3'- gACGGUGg-UCuuCCU-GCUGUG--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 10697 0.69 0.497286
Target:  5'- -aGCCacgGCCAGcguuGGGCGACugGG-GGa -3'
miRNA:   3'- gaCGG---UGGUCuu--CCUGCUGugCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 16805 0.69 0.487232
Target:  5'- -gGCCAgCAGGGuGACGGCAagcaucaaGGCGGc -3'
miRNA:   3'- gaCGGUgGUCUUcCUGCUGUg-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 18453 0.69 0.486232
Target:  5'- uUGCCGCCGGucGGGuucaugacccaauCGugACGGCu- -3'
miRNA:   3'- gACGGUGGUCuuCCU-------------GCugUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 11223 0.69 0.45767
Target:  5'- -gGCCGCCAGAccGGCGAaGCGGaccaaGGu -3'
miRNA:   3'- gaCGGUGGUCUucCUGCUgUGCCg----CC- -5'
12422 5' -57.1 NC_003324.1 + 28687 0.69 0.45767
Target:  5'- -gGCCAC---GAGGGCGACAgcgGGCGGa -3'
miRNA:   3'- gaCGGUGgucUUCCUGCUGUg--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.