miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 39826 0.67 0.612641
Target:  5'- gUGCCGCCGGAcaccaAGGcCGcCAugUGGUGGc -3'
miRNA:   3'- gACGGUGGUCU-----UCCuGCuGU--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 2686 0.67 0.612641
Target:  5'- -gGCCGCUucGGcAAGGgcACGAUgucgGCGGCGGc -3'
miRNA:   3'- gaCGGUGG--UC-UUCC--UGCUG----UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 9485 0.66 0.622306
Target:  5'- -cGCUACCuGAAgaaugguGGcACGGC-CGGCGGc -3'
miRNA:   3'- gaCGGUGGuCUU-------CC-UGCUGuGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 14581 0.66 0.623381
Target:  5'- cCUGCCGgCGcAAGcggccGGCGGCGCaGGCGGu -3'
miRNA:   3'- -GACGGUgGUcUUC-----CUGCUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 51491 0.66 0.633053
Target:  5'- aUGCCcaccaaguuucguACCGGGcagacgAGGACGAaCAUGGCcGGu -3'
miRNA:   3'- gACGG-------------UGGUCU------UCCUGCU-GUGCCG-CC- -5'
12422 5' -57.1 NC_003324.1 + 25529 0.66 0.634128
Target:  5'- aUGCuCGCCaAGuGGGuCGGCugGgGCGGc -3'
miRNA:   3'- gACG-GUGG-UCuUCCuGCUGugC-CGCC- -5'
12422 5' -57.1 NC_003324.1 + 5058 0.66 0.634128
Target:  5'- -cGCCGCCA--AGGACccgaACGCGGCc- -3'
miRNA:   3'- gaCGGUGGUcuUCCUGc---UGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 31318 0.66 0.644874
Target:  5'- gUGCgGCCGGcGGcGCuGGCGCuGGCGGg -3'
miRNA:   3'- gACGgUGGUCuUCcUG-CUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 52288 0.66 0.644874
Target:  5'- uCUaCCGCCcGAuucGGGGCGGC-CGGCGu -3'
miRNA:   3'- -GAcGGUGGuCU---UCCUGCUGuGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 30078 0.66 0.644874
Target:  5'- -cGUCGCCAGAgugcaccggccGGGAuCGAUGCGGaccCGGc -3'
miRNA:   3'- gaCGGUGGUCU-----------UCCU-GCUGUGCC---GCC- -5'
12422 5' -57.1 NC_003324.1 + 36416 0.66 0.644874
Target:  5'- -aGUCAUUAuGGAcGAUGGCGCGGUGGa -3'
miRNA:   3'- gaCGGUGGU-CUUcCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 23025 0.66 0.655608
Target:  5'- -cGCCACCGGA--GACuggGACGCGGUu- -3'
miRNA:   3'- gaCGGUGGUCUucCUG---CUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 45831 0.66 0.655608
Target:  5'- gCUGCgGCgAGAacagugAGGugGAaACGGCGcGg -3'
miRNA:   3'- -GACGgUGgUCU------UCCugCUgUGCCGC-C- -5'
12422 5' -57.1 NC_003324.1 + 6104 0.66 0.666322
Target:  5'- aUGUCGUCGGcAGGAgcgGACugGGCGGc -3'
miRNA:   3'- gACGGUGGUCuUCCUg--CUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 43217 0.66 0.677005
Target:  5'- -aGCuCGCCGucGAGGACGGCAaccuGCGGg -3'
miRNA:   3'- gaCG-GUGGUc-UUCCUGCUGUgc--CGCC- -5'
12422 5' -57.1 NC_003324.1 + 42309 0.66 0.677005
Target:  5'- cCUGCCACguGccGGGCG-C-CGGUGa -3'
miRNA:   3'- -GACGGUGguCuuCCUGCuGuGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 52456 0.66 0.677005
Target:  5'- uUGCCgcgGCCAGAcGGAUGcAUGCaGGCGa -3'
miRNA:   3'- gACGG---UGGUCUuCCUGC-UGUG-CCGCc -5'
12422 5' -57.1 NC_003324.1 + 18649 0.66 0.677005
Target:  5'- -cGUCGCCAGugaaaccGGACGugcccuUGCGGUGGa -3'
miRNA:   3'- gaCGGUGGUCuu-----CCUGCu-----GUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 44811 0.66 0.677005
Target:  5'- gCUGCUGCgGGGagaagGGGGCGGCGucauUGGCGu -3'
miRNA:   3'- -GACGGUGgUCU-----UCCUGCUGU----GCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.