miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 39826 0.67 0.612641
Target:  5'- gUGCCGCCGGAcaccaAGGcCGcCAugUGGUGGc -3'
miRNA:   3'- gACGGUGGUCU-----UCCuGCuGU--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 40547 0.67 0.569927
Target:  5'- gCUGCUucCCAGAAGcGGaGACACugauGGCGGc -3'
miRNA:   3'- -GACGGu-GGUCUUC-CUgCUGUG----CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42309 0.66 0.677005
Target:  5'- cCUGCCACguGccGGGCG-C-CGGUGa -3'
miRNA:   3'- -GACGGUGguCuuCCUGCuGuGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 42394 0.7 0.419807
Target:  5'- uCUGUCACCGGcgcccGGcACGugGCaGGCGGc -3'
miRNA:   3'- -GACGGUGGUCuu---CC-UGCugUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 42891 0.7 0.401599
Target:  5'- uCUGCgACCgAGAacgacccagcgcGGGGCGACcauUGGCGGu -3'
miRNA:   3'- -GACGgUGG-UCU------------UCCUGCUGu--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 43217 0.66 0.677005
Target:  5'- -aGCuCGCCGucGAGGACGGCAaccuGCGGg -3'
miRNA:   3'- gaCG-GUGGUc-UUCCUGCUGUgc--CGCC- -5'
12422 5' -57.1 NC_003324.1 + 44811 0.66 0.677005
Target:  5'- gCUGCUGCgGGGagaagGGGGCGGCGucauUGGCGu -3'
miRNA:   3'- -GACGGUGgUCU-----UCCUGCUGU----GCCGCc -5'
12422 5' -57.1 NC_003324.1 + 45831 0.66 0.655608
Target:  5'- gCUGCgGCgAGAacagugAGGugGAaACGGCGcGg -3'
miRNA:   3'- -GACGgUGgUCU------UCCugCUgUGCCGC-C- -5'
12422 5' -57.1 NC_003324.1 + 45959 0.69 0.477275
Target:  5'- -aGCCuCCGGGAGGAgcUGAUuACGGgGGa -3'
miRNA:   3'- gaCGGuGGUCUUCCU--GCUG-UGCCgCC- -5'
12422 5' -57.1 NC_003324.1 + 46440 0.71 0.339573
Target:  5'- cCUGCuUACCgcuuuccaacugagAGAcGGACGACACGGCa- -3'
miRNA:   3'- -GACG-GUGG--------------UCUuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 47811 0.68 0.54778
Target:  5'- --cCCGCCGGAAGGAagacgaauaccUGACGCcuuaugaGGCGGc -3'
miRNA:   3'- gacGGUGGUCUUCCU-----------GCUGUG-------CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 48814 0.7 0.419807
Target:  5'- gUGCCACCgAGGccaaugGGGGCGACGaGGUGa -3'
miRNA:   3'- gACGGUGG-UCU------UCCUGCUGUgCCGCc -5'
12422 5' -57.1 NC_003324.1 + 50284 0.69 0.44803
Target:  5'- -cGCCGCCGGuc-GACGGCAagaaGGCGu -3'
miRNA:   3'- gaCGGUGGUCuucCUGCUGUg---CCGCc -5'
12422 5' -57.1 NC_003324.1 + 51491 0.66 0.633053
Target:  5'- aUGCCcaccaaguuucguACCGGGcagacgAGGACGAaCAUGGCcGGu -3'
miRNA:   3'- gACGG-------------UGGUCU------UCCUGCU-GUGCCG-CC- -5'
12422 5' -57.1 NC_003324.1 + 52288 0.66 0.644874
Target:  5'- uCUaCCGCCcGAuucGGGGCGGC-CGGCGu -3'
miRNA:   3'- -GAcGGUGGuCU---UCCUGCUGuGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 52456 0.66 0.677005
Target:  5'- uUGCCgcgGCCAGAcGGAUGcAUGCaGGCGa -3'
miRNA:   3'- gACGG---UGGUCUuCCUGC-UGUG-CCGCc -5'
12422 5' -57.1 NC_003324.1 + 53010 0.74 0.248936
Target:  5'- aCUGUUuCCAGccAGGcGACGAUGCGGCGGa -3'
miRNA:   3'- -GACGGuGGUC--UUC-CUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 53662 0.68 0.517666
Target:  5'- aUGUCGCaaAGggGGAcCGGCAUcaGGCGGc -3'
miRNA:   3'- gACGGUGg-UCuuCCU-GCUGUG--CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 54895 0.68 0.52798
Target:  5'- cCUGCCggucucACCGcGA---ACGGCGCGGCGGu -3'
miRNA:   3'- -GACGG------UGGU-CUuccUGCUGUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.