miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12424 3' -55.5 NC_003324.1 + 13335 0.67 0.656412
Target:  5'- -gUUCUUCGACGCuUGCgGCCAuGAUg -3'
miRNA:   3'- ugAAGAGGCUGUG-GCGgCGGUuCUAg -5'
12424 3' -55.5 NC_003324.1 + 20259 0.66 0.677229
Target:  5'- cGCcUCUCUGACcgagGCUGCCGgCAgcguucuGGAUCg -3'
miRNA:   3'- -UGaAGAGGCUG----UGGCGGCgGU-------UCUAG- -5'
12424 3' -55.5 NC_003324.1 + 35538 0.66 0.678322
Target:  5'- cGCUcg-CCGACAUCGCCGaCGuGAUCc -3'
miRNA:   3'- -UGAagaGGCUGUGGCGGCgGUuCUAG- -5'
12424 3' -55.5 NC_003324.1 + 32574 0.66 0.710829
Target:  5'- gACaUCgUCGACACCGUgauCGCCGAGGc- -3'
miRNA:   3'- -UGaAGaGGCUGUGGCG---GCGGUUCUag -5'
12424 3' -55.5 NC_003324.1 + 34819 0.73 0.328297
Target:  5'- ---cCUCCGcCACCGUCGUCAAGAa- -3'
miRNA:   3'- ugaaGAGGCuGUGGCGGCGGUUCUag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.