miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12427 3' -63.4 NC_003324.1 + 26813 0.66 0.347091
Target:  5'- gCGCUUgGCUGGcUUUGGCG-CC-GCUCc -3'
miRNA:   3'- -GCGAAgCGGCC-AGACCGCcGGcCGAG- -5'
12427 3' -63.4 NC_003324.1 + 42971 0.66 0.336171
Target:  5'- cCGCUgggUCGUucuCGGUCgcagauccucgcgGGcCGGCCGGCa- -3'
miRNA:   3'- -GCGA---AGCG---GCCAGa------------CC-GCCGGCCGag -5'
12427 3' -63.4 NC_003324.1 + 14575 0.67 0.261689
Target:  5'- uCGCggccUGCCGGcgCaaGCGGCCGGCg- -3'
miRNA:   3'- -GCGaa--GCGGCCa-GacCGCCGGCCGag -5'
12427 3' -63.4 NC_003324.1 + 39446 0.67 0.261689
Target:  5'- uGCUUCGCCGGaUgUGGCa-CCGGaacaUCg -3'
miRNA:   3'- gCGAAGCGGCC-AgACCGccGGCCg---AG- -5'
12427 3' -63.4 NC_003324.1 + 1022 0.67 0.261689
Target:  5'- aGC-UCGCUGac--GGCGGCgGGCUCa -3'
miRNA:   3'- gCGaAGCGGCcagaCCGCCGgCCGAG- -5'
12427 3' -63.4 NC_003324.1 + 13169 0.69 0.220253
Target:  5'- gGCUgCGUCGG-C-GGCGGUCGGCg- -3'
miRNA:   3'- gCGAaGCGGCCaGaCCGCCGGCCGag -5'
12427 3' -63.4 NC_003324.1 + 27867 0.69 0.214812
Target:  5'- gCGCUUCGUCcucgCUGGCGuaGCCGGC-Ca -3'
miRNA:   3'- -GCGAAGCGGcca-GACCGC--CGGCCGaG- -5'
12427 3' -63.4 NC_003324.1 + 41867 0.69 0.193699
Target:  5'- aCGUcUCGCCGGUCaUGGCGaGCagcagugUGGUUCc -3'
miRNA:   3'- -GCGaAGCGGCCAG-ACCGC-CG-------GCCGAG- -5'
12427 3' -63.4 NC_003324.1 + 19517 0.71 0.150082
Target:  5'- gGCUUUGCCGGUaaGGacaaGGCCaGGCg- -3'
miRNA:   3'- gCGAAGCGGCCAgaCCg---CCGG-CCGag -5'
12427 3' -63.4 NC_003324.1 + 53186 0.71 0.150082
Target:  5'- aGCaugUgGUgGGUgguagCUGGCGGCCGGCUUc -3'
miRNA:   3'- gCGa--AgCGgCCA-----GACCGCCGGCCGAG- -5'
12427 3' -63.4 NC_003324.1 + 32747 0.73 0.115273
Target:  5'- cCGC--CGaCCGGUUUGGUGGCgGGCUUu -3'
miRNA:   3'- -GCGaaGC-GGCCAGACCGCCGgCCGAG- -5'
12427 3' -63.4 NC_003324.1 + 23668 0.76 0.063538
Target:  5'- uGCUUCGCCGGUauccacGGCGcGCCgGGCUUc -3'
miRNA:   3'- gCGAAGCGGCCAga----CCGC-CGG-CCGAG- -5'
12427 3' -63.4 NC_003324.1 + 42757 0.76 0.061818
Target:  5'- aGCggUUGCCGGUcCUGGUGGCcCGGCg- -3'
miRNA:   3'- gCGa-AGCGGCCA-GACCGCCG-GCCGag -5'
12427 3' -63.4 NC_003324.1 + 11145 1.09 0.000171
Target:  5'- cCGCUUCGCCGGUCUGGCGGCCGGCUCg -3'
miRNA:   3'- -GCGAAGCGGCCAGACCGCCGGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.