miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12429 3' -50.1 NC_003324.1 + 11656 1.16 0.001464
Target:  5'- gCCGAUCAACAAGCCCAUUGAGGUCGCa -3'
miRNA:   3'- -GGCUAGUUGUUCGGGUAACUCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 49414 0.76 0.491317
Target:  5'- gCGAUCGGCGAGCCCGgcaGcGG-CGCu -3'
miRNA:   3'- gGCUAGUUGUUCGGGUaa-CuCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 17361 0.73 0.657256
Target:  5'- ----aCGAUAGGCCUugagGAGGUCGCg -3'
miRNA:   3'- ggcuaGUUGUUCGGGuaa-CUCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 29653 0.73 0.657256
Target:  5'- aUCGAgCGACGAGgCC-UUGAGGcCGCu -3'
miRNA:   3'- -GGCUaGUUGUUCgGGuAACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 25993 0.71 0.74445
Target:  5'- aCCaGAUCGAUAGGCCCGacUUcGGGGUgacugagCGCg -3'
miRNA:   3'- -GG-CUAGUUGUUCGGGU--AA-CUCCA-------GCG- -5'
12429 3' -50.1 NC_003324.1 + 50016 0.71 0.766623
Target:  5'- -aGAUCGGCAAGCgC--UGGGGcCGCu -3'
miRNA:   3'- ggCUAGUUGUUCGgGuaACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 22450 0.71 0.766623
Target:  5'- gCCGAgaucacgCAGCAugGGCUCGUcGAGGUagCGCa -3'
miRNA:   3'- -GGCUa------GUUGU--UCGGGUAaCUCCA--GCG- -5'
12429 3' -50.1 NC_003324.1 + 14848 0.71 0.766623
Target:  5'- aCUGAUCuuCAAGUCgGaUGAGGaCGCg -3'
miRNA:   3'- -GGCUAGuuGUUCGGgUaACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 34860 0.71 0.766623
Target:  5'- gCCGAUCgAGCAGGCCCuugacgauUUGaAGGaUCaGCg -3'
miRNA:   3'- -GGCUAG-UUGUUCGGGu-------AAC-UCC-AG-CG- -5'
12429 3' -50.1 NC_003324.1 + 49478 0.7 0.797159
Target:  5'- gCCGAUC-GCGAucgaguauuuGCCCGggucgcuuucGAGGUCGCc -3'
miRNA:   3'- -GGCUAGuUGUU----------CGGGUaa--------CUCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 43570 0.69 0.853048
Target:  5'- gCCGcgCAACGucAGCCgAUUGAGGg--- -3'
miRNA:   3'- -GGCuaGUUGU--UCGGgUAACUCCagcg -5'
12429 3' -50.1 NC_003324.1 + 7864 0.69 0.853048
Target:  5'- gCCGcggCGGCaAAGCCCGUUGcGaUCGCg -3'
miRNA:   3'- -GGCua-GUUG-UUCGGGUAACuCcAGCG- -5'
12429 3' -50.1 NC_003324.1 + 21106 0.69 0.861568
Target:  5'- aCCu-UCGACAAGCCCAagGAuuucGG-CGCg -3'
miRNA:   3'- -GGcuAGUUGUUCGGGUaaCU----CCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 3586 0.68 0.877056
Target:  5'- gCCGAUCcaGugGAGCaaAUUGGcauccguGGUCGCg -3'
miRNA:   3'- -GGCUAG--UugUUCGggUAACU-------CCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 49973 0.68 0.884825
Target:  5'- gCGAUCGGCGcuGCCCugaUGGGGgcaaugaUCGCc -3'
miRNA:   3'- gGCUAGUUGUu-CGGGua-ACUCC-------AGCG- -5'
12429 3' -50.1 NC_003324.1 + 32173 0.68 0.90716
Target:  5'- aCCGG-CGACGAGCC----GAGG-CGCa -3'
miRNA:   3'- -GGCUaGUUGUUCGGguaaCUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 11750 0.67 0.913785
Target:  5'- gUGGUCAAUGccguGCCCGgcccGGUCGCg -3'
miRNA:   3'- gGCUAGUUGUu---CGGGUaacuCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 29345 0.67 0.926167
Target:  5'- gCCGAUCGagcGCGAGCCCGgcgaUGcAGGccCGa -3'
miRNA:   3'- -GGCUAGU---UGUUCGGGUa---AC-UCCa-GCg -5'
12429 3' -50.1 NC_003324.1 + 19921 0.67 0.931923
Target:  5'- gCCGGUCugauaGACGAGCCCAgucccUGGGacacaUUGCa -3'
miRNA:   3'- -GGCUAG-----UUGUUCGGGUa----ACUCc----AGCG- -5'
12429 3' -50.1 NC_003324.1 + 43147 0.67 0.931923
Target:  5'- cUCGA-CGGCGAGCUUGUUGAGcgagCGCc -3'
miRNA:   3'- -GGCUaGUUGUUCGGGUAACUCca--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.