miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12429 3' -50.1 NC_003324.1 + 11656 1.16 0.001464
Target:  5'- gCCGAUCAACAAGCCCAUUGAGGUCGCa -3'
miRNA:   3'- -GGCUAGUUGUUCGGGUAACUCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 42084 0.66 0.956389
Target:  5'- aCGG-CAACGAGCCUAUcagcaGGGGccgggagcgcuUCGCa -3'
miRNA:   3'- gGCUaGUUGUUCGGGUAa----CUCC-----------AGCG- -5'
12429 3' -50.1 NC_003324.1 + 24975 0.66 0.952061
Target:  5'- -gGAUgGA-GAGCUUGUUGAGGUgGCg -3'
miRNA:   3'- ggCUAgUUgUUCGGGUAACUCCAgCG- -5'
12429 3' -50.1 NC_003324.1 + 22255 0.66 0.947455
Target:  5'- gCCGAUCGcgGCGAGCUgCGccUUGAuGUCGUc -3'
miRNA:   3'- -GGCUAGU--UGUUCGG-GU--AACUcCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 2736 0.66 0.942565
Target:  5'- gCCGAUC-GCGcGCCCAcaGuGG-CGCa -3'
miRNA:   3'- -GGCUAGuUGUuCGGGUaaCuCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 42507 0.67 0.937388
Target:  5'- uCCGGUCccCAcGGCaaAUUGGGGUCaGCa -3'
miRNA:   3'- -GGCUAGuuGU-UCGggUAACUCCAG-CG- -5'
12429 3' -50.1 NC_003324.1 + 43147 0.67 0.931923
Target:  5'- cUCGA-CGGCGAGCUUGUUGAGcgagCGCc -3'
miRNA:   3'- -GGCUaGUUGUUCGGGUAACUCca--GCG- -5'
12429 3' -50.1 NC_003324.1 + 11750 0.67 0.913785
Target:  5'- gUGGUCAAUGccguGCCCGgcccGGUCGCg -3'
miRNA:   3'- gGCUAGUUGUu---CGGGUaacuCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 49973 0.68 0.884825
Target:  5'- gCGAUCGGCGcuGCCCugaUGGGGgcaaugaUCGCc -3'
miRNA:   3'- gGCUAGUUGUu-CGGGua-ACUCC-------AGCG- -5'
12429 3' -50.1 NC_003324.1 + 43570 0.69 0.853048
Target:  5'- gCCGcgCAACGucAGCCgAUUGAGGg--- -3'
miRNA:   3'- -GGCuaGUUGU--UCGGgUAACUCCagcg -5'
12429 3' -50.1 NC_003324.1 + 49414 0.76 0.491317
Target:  5'- gCGAUCGGCGAGCCCGgcaGcGG-CGCu -3'
miRNA:   3'- gGCUAGUUGUUCGGGUaa-CuCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 17361 0.73 0.657256
Target:  5'- ----aCGAUAGGCCUugagGAGGUCGCg -3'
miRNA:   3'- ggcuaGUUGUUCGGGuaa-CUCCAGCG- -5'
12429 3' -50.1 NC_003324.1 + 25993 0.71 0.74445
Target:  5'- aCCaGAUCGAUAGGCCCGacUUcGGGGUgacugagCGCg -3'
miRNA:   3'- -GG-CUAGUUGUUCGGGU--AA-CUCCA-------GCG- -5'
12429 3' -50.1 NC_003324.1 + 14848 0.71 0.766623
Target:  5'- aCUGAUCuuCAAGUCgGaUGAGGaCGCg -3'
miRNA:   3'- -GGCUAGuuGUUCGGgUaACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 22450 0.71 0.766623
Target:  5'- gCCGAgaucacgCAGCAugGGCUCGUcGAGGUagCGCa -3'
miRNA:   3'- -GGCUa------GUUGU--UCGGGUAaCUCCA--GCG- -5'
12429 3' -50.1 NC_003324.1 + 50016 0.71 0.766623
Target:  5'- -aGAUCGGCAAGCgC--UGGGGcCGCu -3'
miRNA:   3'- ggCUAGUUGUUCGgGuaACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 29653 0.73 0.657256
Target:  5'- aUCGAgCGACGAGgCC-UUGAGGcCGCu -3'
miRNA:   3'- -GGCUaGUUGUUCgGGuAACUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 31864 0.66 0.960443
Target:  5'- gCCGAau-ACGGGCCCGaaGAGGcCGg -3'
miRNA:   3'- -GGCUaguUGUUCGGGUaaCUCCaGCg -5'
12429 3' -50.1 NC_003324.1 + 36541 0.66 0.960443
Target:  5'- uCCGAUCuggAACAAGCgCCGc--GGG-CGCg -3'
miRNA:   3'- -GGCUAG---UUGUUCG-GGUaacUCCaGCG- -5'
12429 3' -50.1 NC_003324.1 + 29839 0.66 0.960443
Target:  5'- gCCGAUCcuUggGCgCAUcGAGG-CGUa -3'
miRNA:   3'- -GGCUAGuuGuuCGgGUAaCUCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.