miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12430 5' -55.5 NC_003324.1 + 44098 0.66 0.667411
Target:  5'- --uCGCAGCGCucggcaugaucccgGCgGCAGCCGAg -3'
miRNA:   3'- gcuGCGUCGCGuaua----------UGgCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 39699 0.66 0.660742
Target:  5'- cCGcACGUcGCGcCAUGUGCCcggccugcgguucuGCAGCCAc -3'
miRNA:   3'- -GC-UGCGuCGC-GUAUAUGG--------------CGUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 14461 0.66 0.652948
Target:  5'- gGuuGCGGCGCGUugauugGCaGCAGCCGu -3'
miRNA:   3'- gCugCGUCGCGUAua----UGgCGUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 50514 0.66 0.652948
Target:  5'- uGAaaCAGCGCug--GCaCGCAGCCAGc -3'
miRNA:   3'- gCUgcGUCGCGuauaUG-GCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 39801 0.66 0.641797
Target:  5'- uGugGUGGCuGCAga-ACCGCAGgCCGGg -3'
miRNA:   3'- gCugCGUCG-CGUauaUGGCGUC-GGUU- -5'
12430 5' -55.5 NC_003324.1 + 152 0.66 0.641797
Target:  5'- uCGACGgcCGGCGCAUAagagcgugGCUGCGGCa-- -3'
miRNA:   3'- -GCUGC--GUCGCGUAUa-------UGGCGUCGguu -5'
12430 5' -55.5 NC_003324.1 + 36133 0.66 0.641797
Target:  5'- cCGAUaCGGCGUugGUAgUGCGGCCAAg -3'
miRNA:   3'- -GCUGcGUCGCGuaUAUgGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 56017 0.66 0.641797
Target:  5'- gGGCGgAGCGC----GCCGUGGUCAAg -3'
miRNA:   3'- gCUGCgUCGCGuauaUGGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 36273 0.66 0.640682
Target:  5'- uGAUGUcGCGCAacaucagUAUGCUGCAGCa-- -3'
miRNA:   3'- gCUGCGuCGCGU-------AUAUGGCGUCGguu -5'
12430 5' -55.5 NC_003324.1 + 37271 0.67 0.612791
Target:  5'- -aGCGCAGC-CGUAccgauuucaagauccUGCCGCGGCgCAAg -3'
miRNA:   3'- gcUGCGUCGcGUAU---------------AUGGCGUCG-GUU- -5'
12430 5' -55.5 NC_003324.1 + 24153 0.67 0.608334
Target:  5'- uGGCGCAGCGCAccggcgagaagGUAaagcCCGCcaguGCCGAg -3'
miRNA:   3'- gCUGCGUCGCGUa----------UAU----GGCGu---CGGUU- -5'
12430 5' -55.5 NC_003324.1 + 31180 0.67 0.597209
Target:  5'- cCGAgcaGCAGCGCAU-UGCCGCaaGGaCCGg -3'
miRNA:   3'- -GCUg--CGUCGCGUAuAUGGCG--UC-GGUu -5'
12430 5' -55.5 NC_003324.1 + 29958 0.67 0.586114
Target:  5'- gGGCGUccuGCGUAgcgGCgGCAGCCGGg -3'
miRNA:   3'- gCUGCGu--CGCGUauaUGgCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 54000 0.67 0.586114
Target:  5'- gCGGCGaAGCGCAcuUGCCGC-GCUGAu -3'
miRNA:   3'- -GCUGCgUCGCGUauAUGGCGuCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 38160 0.67 0.575059
Target:  5'- cCGACGCgcuucgccagaaGGCGCA-GUACCGCGaggaaguccGCCGu -3'
miRNA:   3'- -GCUGCG------------UCGCGUaUAUGGCGU---------CGGUu -5'
12430 5' -55.5 NC_003324.1 + 32534 0.67 0.575059
Target:  5'- gCGACG-AGgGCAUGgcUGCCGUuGCCAGc -3'
miRNA:   3'- -GCUGCgUCgCGUAU--AUGGCGuCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 32158 0.68 0.531402
Target:  5'- aGGCGCAGCGag---GCCGaagAGCCAu -3'
miRNA:   3'- gCUGCGUCGCguauaUGGCg--UCGGUu -5'
12430 5' -55.5 NC_003324.1 + 14601 0.68 0.520667
Target:  5'- gCGGCGCAGgcgguaGCGUGgcgGCCGgAGCUAc -3'
miRNA:   3'- -GCUGCGUCg-----CGUAUa--UGGCgUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 30749 0.69 0.510017
Target:  5'- cCGGCGUGGCGCG-AUcCgCGCAGCUAu -3'
miRNA:   3'- -GCUGCGUCGCGUaUAuG-GCGUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 3245 0.69 0.478647
Target:  5'- uCGGCGCGGUGCcgGUGCUuucggaGCucGCCAAg -3'
miRNA:   3'- -GCUGCGUCGCGuaUAUGG------CGu-CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.