miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12430 5' -55.5 NC_003324.1 + 12055 1.07 0.001114
Target:  5'- aCGACGCAGCGCAUAUACCGCAGCCAAa -3'
miRNA:   3'- -GCUGCGUCGCGUAUAUGGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 39699 0.66 0.660742
Target:  5'- cCGcACGUcGCGcCAUGUGCCcggccugcgguucuGCAGCCAc -3'
miRNA:   3'- -GC-UGCGuCGC-GUAUAUGG--------------CGUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 50514 0.66 0.652948
Target:  5'- uGAaaCAGCGCug--GCaCGCAGCCAGc -3'
miRNA:   3'- gCUgcGUCGCGuauaUG-GCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 36133 0.66 0.641797
Target:  5'- cCGAUaCGGCGUugGUAgUGCGGCCAAg -3'
miRNA:   3'- -GCUGcGUCGCGuaUAUgGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 56017 0.66 0.641797
Target:  5'- gGGCGgAGCGC----GCCGUGGUCAAg -3'
miRNA:   3'- gCUGCgUCGCGuauaUGGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 29958 0.67 0.586114
Target:  5'- gGGCGUccuGCGUAgcgGCgGCAGCCGGg -3'
miRNA:   3'- gCUGCGu--CGCGUauaUGgCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 14601 0.68 0.520667
Target:  5'- gCGGCGCAGgcgguaGCGUGgcgGCCGgAGCUAc -3'
miRNA:   3'- -GCUGCGUCg-----CGUAUa--UGGCgUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 44300 0.69 0.458268
Target:  5'- uCGACGaaccgGGCGCG-GUGgCGCGGCCGAu -3'
miRNA:   3'- -GCUGCg----UCGCGUaUAUgGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 380 0.7 0.438362
Target:  5'- -aGCGCGGCGCGgcuaaccACCGCcaAGCCAu -3'
miRNA:   3'- gcUGCGUCGCGUaua----UGGCG--UCGGUu -5'
12430 5' -55.5 NC_003324.1 + 33606 0.7 0.400089
Target:  5'- -uGCGCAGCGCGU-UGCCGaCGGCgAu -3'
miRNA:   3'- gcUGCGUCGCGUAuAUGGC-GUCGgUu -5'
12430 5' -55.5 NC_003324.1 + 22475 0.71 0.372821
Target:  5'- uCGAgGUAGCGCAUG-ACCGUgaacauuucGGCCAu -3'
miRNA:   3'- -GCUgCGUCGCGUAUaUGGCG---------UCGGUu -5'
12430 5' -55.5 NC_003324.1 + 25431 0.71 0.355357
Target:  5'- aGGCGUuGCGCAg--GCCGCcccAGCCGAc -3'
miRNA:   3'- gCUGCGuCGCGUauaUGGCG---UCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 22010 0.74 0.243117
Target:  5'- uCGACGaGGCGCAUGUcgAgCGCAGCCu- -3'
miRNA:   3'- -GCUGCgUCGCGUAUA--UgGCGUCGGuu -5'
12430 5' -55.5 NC_003324.1 + 27061 0.74 0.243117
Target:  5'- gCGACGCGGCGU---UACCGUuguGGCCGGu -3'
miRNA:   3'- -GCUGCGUCGCGuauAUGGCG---UCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 37271 0.67 0.612791
Target:  5'- -aGCGCAGC-CGUAccgauuucaagauccUGCCGCGGCgCAAg -3'
miRNA:   3'- gcUGCGUCGcGUAU---------------AUGGCGUCG-GUU- -5'
12430 5' -55.5 NC_003324.1 + 36273 0.66 0.640682
Target:  5'- uGAUGUcGCGCAacaucagUAUGCUGCAGCa-- -3'
miRNA:   3'- gCUGCGuCGCGU-------AUAUGGCGUCGguu -5'
12430 5' -55.5 NC_003324.1 + 39801 0.66 0.641797
Target:  5'- uGugGUGGCuGCAga-ACCGCAGgCCGGg -3'
miRNA:   3'- gCugCGUCG-CGUauaUGGCGUC-GGUU- -5'
12430 5' -55.5 NC_003324.1 + 152 0.66 0.641797
Target:  5'- uCGACGgcCGGCGCAUAagagcgugGCUGCGGCa-- -3'
miRNA:   3'- -GCUGC--GUCGCGUAUa-------UGGCGUCGguu -5'
12430 5' -55.5 NC_003324.1 + 14461 0.66 0.652948
Target:  5'- gGuuGCGGCGCGUugauugGCaGCAGCCGu -3'
miRNA:   3'- gCugCGUCGCGUAua----UGgCGUCGGUu -5'
12430 5' -55.5 NC_003324.1 + 48512 0.76 0.19103
Target:  5'- uCGGCGCGGCGCucuucgaugaggcgGUgaagcguuccaagGCCGCAGCCGAg -3'
miRNA:   3'- -GCUGCGUCGCGua------------UA-------------UGGCGUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.