miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 5' -57.1 NC_003324.1 + 1675 0.75 0.183861
Target:  5'- aCGCUGACGGCGGuucguccuggcacGCUGAUCUccacgccuuGGACCGa -3'
miRNA:   3'- -GCGGCUGCCGUU-------------CGACUAGG---------UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 2176 0.66 0.645143
Target:  5'- uGCCGACaGCGcaggAGCUGcUCacgGGGCCGa -3'
miRNA:   3'- gCGGCUGcCGU----UCGACuAGg--UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 4557 0.68 0.495845
Target:  5'- gCGCCGugauCGaGCGcGCgcaGGUCCAGGCCc -3'
miRNA:   3'- -GCGGCu---GC-CGUuCGa--CUAGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 5255 0.66 0.645143
Target:  5'- cCGCCGcaccaGCGGCAGGCgauAUCCucGAUCu -3'
miRNA:   3'- -GCGGC-----UGCCGUUCGac-UAGGu-CUGGu -5'
12431 5' -57.1 NC_003324.1 + 6086 0.71 0.315549
Target:  5'- uCGCCGAgGGCAAGUcGGUCCAacuuGGCgAa -3'
miRNA:   3'- -GCGGCUgCCGUUCGaCUAGGU----CUGgU- -5'
12431 5' -57.1 NC_003324.1 + 8349 0.69 0.442229
Target:  5'- cCGUCGGCGGgGAGCUGcgucugucauggaaAUacauccgCCAGACCGa -3'
miRNA:   3'- -GCGGCUGCCgUUCGAC--------------UA-------GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 10270 0.69 0.455822
Target:  5'- gCGCCGAUGaGCAcuagccgaAGCUGA--CGGGCCGa -3'
miRNA:   3'- -GCGGCUGC-CGU--------UCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 12394 0.67 0.569303
Target:  5'- aGCCGACGuugcGCGAGUauuUCuCAGGCCAc -3'
miRNA:   3'- gCGGCUGC----CGUUCGacuAG-GUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 13132 1.08 0.000785
Target:  5'- uCGCCGACGGCAAGCUGAUCCAGACCAu -3'
miRNA:   3'- -GCGGCUGCCGUUCGACUAGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 13332 0.76 0.174753
Target:  5'- uGCuCGACGGC-AGCcGcgCCGGACCAa -3'
miRNA:   3'- gCG-GCUGCCGuUCGaCuaGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 16020 0.68 0.495845
Target:  5'- aCGCaugGACGGCGgacuGGCUGGUgaUgAGGCCAa -3'
miRNA:   3'- -GCGg--CUGCCGU----UCGACUA--GgUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 18522 0.73 0.258646
Target:  5'- cCGaCCGGCGGCAAGgUcgcgcaGA-CCAGACCAg -3'
miRNA:   3'- -GC-GGCUGCCGUUCgA------CUaGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 19559 0.73 0.265274
Target:  5'- uCGCCGACGGCGGucauGUUGGaCCGGGCgAg -3'
miRNA:   3'- -GCGGCUGCCGUU----CGACUaGGUCUGgU- -5'
12431 5' -57.1 NC_003324.1 + 22166 0.67 0.578976
Target:  5'- aCGCCGAUGuaGgAGGcCUGAUCCGGAgaacgcuCCAc -3'
miRNA:   3'- -GCGGCUGC--CgUUC-GACUAGGUCU-------GGU- -5'
12431 5' -57.1 NC_003324.1 + 22254 0.7 0.39026
Target:  5'- uGCCGaucGCGGCGAGCUGcgCCuuGAUg- -3'
miRNA:   3'- gCGGC---UGCCGUUCGACuaGGu-CUGgu -5'
12431 5' -57.1 NC_003324.1 + 22289 0.69 0.439346
Target:  5'- uGCgCGGCGGCAAGCccaccaacaucaccgUGGagcguucUCCGGAUCAg -3'
miRNA:   3'- gCG-GCUGCCGUUCG---------------ACU-------AGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 25026 0.74 0.233481
Target:  5'- aGCCGaACGGCGGGUUGccgaucgCCAGAUCGa -3'
miRNA:   3'- gCGGC-UGCCGUUCGACua-----GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 26442 0.7 0.364111
Target:  5'- uGCCGAacaGGUaucgcGAGCUGAaaCAGGCCGg -3'
miRNA:   3'- gCGGCUg--CCG-----UUCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 28360 0.71 0.316317
Target:  5'- gCGCCGaACGcGCAAGCgauguagcuuccaccGAUCCGGcACCAg -3'
miRNA:   3'- -GCGGC-UGC-CGUUCGa--------------CUAGGUC-UGGU- -5'
12431 5' -57.1 NC_003324.1 + 28626 0.68 0.5061
Target:  5'- aCGCCGccauguugagcGCGGCAGGCcucagUGGUCuCGGuCCGa -3'
miRNA:   3'- -GCGGC-----------UGCCGUUCG-----ACUAG-GUCuGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.