miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 5' -57.1 NC_003324.1 + 47906 0.66 0.612524
Target:  5'- gCGCCGAUGGCcGGCUuAUCCgcuGGGUCGa -3'
miRNA:   3'- -GCGGCUGCCGuUCGAcUAGG---UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 55147 0.68 0.475624
Target:  5'- uGCCGgcaACGGCuacaucuGGCUGAcaCAGGCCGg -3'
miRNA:   3'- gCGGC---UGCCGu------UCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 4557 0.68 0.495845
Target:  5'- gCGCCGugauCGaGCGcGCgcaGGUCCAGGCCc -3'
miRNA:   3'- -GCGGCu---GC-CGUuCGa--CUAGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 16020 0.68 0.495845
Target:  5'- aCGCaugGACGGCGgacuGGCUGGUgaUgAGGCCAa -3'
miRNA:   3'- -GCGg--CUGCCGU----UCGACUA--GgUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 30251 0.68 0.495845
Target:  5'- cCGCCGAcaccauCGGCGA--UGAUgCGGGCCAa -3'
miRNA:   3'- -GCGGCU------GCCGUUcgACUAgGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 48736 0.68 0.5061
Target:  5'- gCGUCGGCGccaGCAGGCUG---CAGGCCAu -3'
miRNA:   3'- -GCGGCUGC---CGUUCGACuagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 31810 0.68 0.5061
Target:  5'- aCGUCGGCGaGcCAAGCcuuacGAUCgAGACCGu -3'
miRNA:   3'- -GCGGCUGC-C-GUUCGa----CUAGgUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 49571 0.67 0.569303
Target:  5'- gGuuGAagaaCGGCAccgucguugaGGCUGA-CCAGACCu -3'
miRNA:   3'- gCggCU----GCCGU----------UCGACUaGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 22166 0.67 0.578976
Target:  5'- aCGCCGAUGuaGgAGGcCUGAUCCGGAgaacgcuCCAc -3'
miRNA:   3'- -GCGGCUGC--CgUUC-GACUAGGUCU-------GGU- -5'
12431 5' -57.1 NC_003324.1 + 50787 0.69 0.44609
Target:  5'- aCGgCGACGGCAAuGCUGccacaCCGGAgCAg -3'
miRNA:   3'- -GCgGCUGCCGUU-CGACua---GGUCUgGU- -5'
12431 5' -57.1 NC_003324.1 + 8349 0.69 0.442229
Target:  5'- cCGUCGGCGGgGAGCUGcgucugucauggaaAUacauccgCCAGACCGa -3'
miRNA:   3'- -GCGGCUGCCgUUCGAC--------------UA-------GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 51296 0.69 0.417607
Target:  5'- aGCCGcCGGCAGGCgucacGAUCauacggaAGACUAu -3'
miRNA:   3'- gCGGCuGCCGUUCGa----CUAGg------UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 13332 0.76 0.174753
Target:  5'- uGCuCGACGGC-AGCcGcgCCGGACCAa -3'
miRNA:   3'- gCG-GCUGCCGuUCGaCuaGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 1675 0.75 0.183861
Target:  5'- aCGCUGACGGCGGuucguccuggcacGCUGAUCUccacgccuuGGACCGa -3'
miRNA:   3'- -GCGGCUGCCGUU-------------CGACUAGG---------UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 44918 0.75 0.194414
Target:  5'- uGCuCGAUGGCAAGCUGcgcggCUAGAUCAa -3'
miRNA:   3'- gCG-GCUGCCGUUCGACua---GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 25026 0.74 0.233481
Target:  5'- aGCCGaACGGCGGGUUGccgaucgCCAGAUCGa -3'
miRNA:   3'- gCGGC-UGCCGUUCGACua-----GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 19559 0.73 0.265274
Target:  5'- uCGCCGACGGCGGucauGUUGGaCCGGGCgAg -3'
miRNA:   3'- -GCGGCUGCCGUU----CGACUaGGUCUGgU- -5'
12431 5' -57.1 NC_003324.1 + 52415 0.73 0.272039
Target:  5'- aGCCGAuCGGCGAaCUGAUCgCGGAUCc -3'
miRNA:   3'- gCGGCU-GCCGUUcGACUAG-GUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 6086 0.71 0.315549
Target:  5'- uCGCCGAgGGCAAGUcGGUCCAacuuGGCgAa -3'
miRNA:   3'- -GCGGCUgCCGUUCGaCUAGGU----CUGgU- -5'
12431 5' -57.1 NC_003324.1 + 22254 0.7 0.39026
Target:  5'- uGCCGaucGCGGCGAGCUGcgCCuuGAUg- -3'
miRNA:   3'- gCGGC---UGCCGUUCGACuaGGu-CUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.