Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 329 | 0.69 | 0.504203 |
Target: 5'- aGGAaCGAACcgGCGAUGCgGCcGCCa -3' miRNA: 3'- gCCUgGUUUGuaCGCUGCG-CGaCGGc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 3069 | 0.66 | 0.707973 |
Target: 5'- uGGGCCGcuCGaaGCGACGaCGCaaGCCGa -3' miRNA: 3'- gCCUGGUuuGUa-CGCUGC-GCGa-CGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 3373 | 0.66 | 0.663881 |
Target: 5'- gCGGAUCuuuGACAUGUuuaugccGACG-GUUGCCGc -3' miRNA: 3'- -GCCUGGu--UUGUACG-------CUGCgCGACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 4662 | 0.69 | 0.514539 |
Target: 5'- cCGGGCCGAcauCAUGCGggccuggaccuGCGCGC-GCuCGa -3' miRNA: 3'- -GCCUGGUUu--GUACGC-----------UGCGCGaCG-GC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 5459 | 0.66 | 0.707973 |
Target: 5'- uGGGUCAGGCAgGCGGCGuCGCccGCCc -3' miRNA: 3'- gCCUGGUUUGUaCGCUGC-GCGa-CGGc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 7245 | 0.7 | 0.47376 |
Target: 5'- uGGAUCAGuugaauuuccGCAUcCGACGUGgUGCCGa -3' miRNA: 3'- gCCUGGUU----------UGUAcGCUGCGCgACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 7814 | 0.67 | 0.621473 |
Target: 5'- uCGGACauaggCAGGcCAUGCGGcCGUGCUGaCCu -3' miRNA: 3'- -GCCUG-----GUUU-GUACGCU-GCGCGAC-GGc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 8175 | 0.7 | 0.425189 |
Target: 5'- aGGGCCAGucccugcucacuGCccgGCGGCGCGC-GCCu -3' miRNA: 3'- gCCUGGUU------------UGua-CGCUGCGCGaCGGc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 9230 | 0.68 | 0.578121 |
Target: 5'- -cGACCGcuauuUGCGGCGCggugauGCUGCCGg -3' miRNA: 3'- gcCUGGUuugu-ACGCUGCG------CGACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 9651 | 0.67 | 0.654112 |
Target: 5'- cCGGcaacGCCAAcgcGCuggGCGGCGUGggGCCGg -3' miRNA: 3'- -GCC----UGGUU---UGua-CGCUGCGCgaCGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 13350 | 1.09 | 0.000985 |
Target: 5'- cCGGACCAAACAUGCGACGCGCUGCCGu -3' miRNA: 3'- -GCCUGGUUUGUACGCUGCGCGACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 17706 | 0.67 | 0.653025 |
Target: 5'- uCGGGcCCGAGCucgGCGGCaucgugcucaacgGCGC-GCCGg -3' miRNA: 3'- -GCCU-GGUUUGua-CGCUG-------------CGCGaCGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 18035 | 0.67 | 0.632356 |
Target: 5'- aCGGGCCAuGCGauagGCGGCGag-UGCCGu -3' miRNA: 3'- -GCCUGGUuUGUa---CGCUGCgcgACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 18731 | 0.7 | 0.434668 |
Target: 5'- aGGGCaCGucCGguuucacugGCGACGCGCUGCgGg -3' miRNA: 3'- gCCUG-GUuuGUa--------CGCUGCGCGACGgC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 19206 | 0.66 | 0.697303 |
Target: 5'- gCGGGCCuGACcgGgauCGACaaGCGCaaUGCCGa -3' miRNA: 3'- -GCCUGGuUUGuaC---GCUG--CGCG--ACGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 19477 | 0.7 | 0.47376 |
Target: 5'- -cGACCucauGCAcggcGCGACGCGC-GCCGg -3' miRNA: 3'- gcCUGGuu--UGUa---CGCUGCGCGaCGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 20808 | 0.73 | 0.299006 |
Target: 5'- gCGGACCGuguugGUGACGCGCaucGCCGu -3' miRNA: 3'- -GCCUGGUuuguaCGCUGCGCGa--CGGC- -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 20907 | 0.66 | 0.675788 |
Target: 5'- uGGACCcgaccgGAACG-GCGAUGCGC-GUCa -3' miRNA: 3'- gCCUGG------UUUGUaCGCUGCGCGaCGGc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 22623 | 0.73 | 0.314024 |
Target: 5'- --uGCCGAGCcccGCGACGCGCUGCa- -3' miRNA: 3'- gccUGGUUUGua-CGCUGCGCGACGgc -5' |
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12432 | 3' | -56.1 | NC_003324.1 | + | 23773 | 0.67 | 0.621473 |
Target: 5'- gGGuCCGAuUcgGCGGCGCGUucgGCCu -3' miRNA: 3'- gCCuGGUUuGuaCGCUGCGCGa--CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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