miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12432 3' -56.1 NC_003324.1 + 13350 1.09 0.000985
Target:  5'- cCGGACCAAACAUGCGACGCGCUGCCGu -3'
miRNA:   3'- -GCCUGGUUUGUACGCUGCGCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 23879 0.67 0.643239
Target:  5'- gCGGACCGAGCuccucGaCGAuCGCGUccgcagguuUGCCGu -3'
miRNA:   3'- -GCCUGGUUUGua---C-GCU-GCGCG---------ACGGC- -5'
12432 3' -56.1 NC_003324.1 + 48484 0.67 0.643239
Target:  5'- --cAUCGAGCGcUGCGACGCcGCUGUCc -3'
miRNA:   3'- gccUGGUUUGU-ACGCUGCG-CGACGGc -5'
12432 3' -56.1 NC_003324.1 + 45100 0.67 0.650852
Target:  5'- uGGACCGcgccaucuuguucaGGCucuCGAC-CGCUGCCGg -3'
miRNA:   3'- gCCUGGU--------------UUGuacGCUGcGCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 9651 0.67 0.654112
Target:  5'- cCGGcaacGCCAAcgcGCuggGCGGCGUGggGCCGg -3'
miRNA:   3'- -GCC----UGGUU---UGua-CGCUGCGCgaCGGC- -5'
12432 3' -56.1 NC_003324.1 + 31093 0.66 0.664965
Target:  5'- cCGGuCCuuGCG-GCaAUGCGCUGCUGc -3'
miRNA:   3'- -GCCuGGuuUGUaCGcUGCGCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 30003 0.66 0.686571
Target:  5'- cCGGugCAcucugGCGACGCGaUGCUGc -3'
miRNA:   3'- -GCCugGUuuguaCGCUGCGCgACGGC- -5'
12432 3' -56.1 NC_003324.1 + 5459 0.66 0.707973
Target:  5'- uGGGUCAGGCAgGCGGCGuCGCccGCCc -3'
miRNA:   3'- gCCUGGUUUGUaCGCUGC-GCGa-CGGc -5'
12432 3' -56.1 NC_003324.1 + 45925 0.66 0.707973
Target:  5'- uCGGaaGCgAAGCAaGCGACGCcGCagGCUGg -3'
miRNA:   3'- -GCC--UGgUUUGUaCGCUGCG-CGa-CGGC- -5'
12432 3' -56.1 NC_003324.1 + 18035 0.67 0.632356
Target:  5'- aCGGGCCAuGCGauagGCGGCGag-UGCCGu -3'
miRNA:   3'- -GCCUGGUuUGUa---CGCUGCgcgACGGC- -5'
12432 3' -56.1 NC_003324.1 + 23773 0.67 0.621473
Target:  5'- gGGuCCGAuUcgGCGGCGCGUucgGCCu -3'
miRNA:   3'- gCCuGGUUuGuaCGCUGCGCGa--CGGc -5'
12432 3' -56.1 NC_003324.1 + 49632 0.68 0.588915
Target:  5'- aGGcGCCAAcgaucGCAacuuCGACGaCGCUGCCGa -3'
miRNA:   3'- gCC-UGGUU-----UGUac--GCUGC-GCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 49084 0.75 0.243876
Target:  5'- gGGGCCGAAa--GCGGCGUcuauuucGCUGCCGg -3'
miRNA:   3'- gCCUGGUUUguaCGCUGCG-------CGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 20808 0.73 0.299006
Target:  5'- gCGGACCGuguugGUGACGCGCaucGCCGu -3'
miRNA:   3'- -GCCUGGUuuguaCGCUGCGCGa--CGGC- -5'
12432 3' -56.1 NC_003324.1 + 22623 0.73 0.314024
Target:  5'- --uGCCGAGCcccGCGACGCGCUGCa- -3'
miRNA:   3'- gccUGGUUUGua-CGCUGCGCGACGgc -5'
12432 3' -56.1 NC_003324.1 + 47963 0.72 0.362455
Target:  5'- gCGGAgacauCCAGACcgGCaccGACGCGCUGaCUGa -3'
miRNA:   3'- -GCCU-----GGUUUGuaCG---CUGCGCGAC-GGC- -5'
12432 3' -56.1 NC_003324.1 + 8175 0.7 0.425189
Target:  5'- aGGGCCAGucccugcucacuGCccgGCGGCGCGC-GCCu -3'
miRNA:   3'- gCCUGGUU------------UGua-CGCUGCGCGaCGGc -5'
12432 3' -56.1 NC_003324.1 + 30526 0.69 0.523915
Target:  5'- gGcGACCuu-CGcugccgcugccgcUGCGACGCGCUGCUc -3'
miRNA:   3'- gC-CUGGuuuGU-------------ACGCUGCGCGACGGc -5'
12432 3' -56.1 NC_003324.1 + 27666 0.68 0.535461
Target:  5'- uCGcGACCAccuCAUGCGugGCGCcgaGCUu -3'
miRNA:   3'- -GC-CUGGUuu-GUACGCugCGCGa--CGGc -5'
12432 3' -56.1 NC_003324.1 + 36695 0.68 0.578121
Target:  5'- cCGGAaccaacauUCGAugAUGCgGAUGCGCUGgCGc -3'
miRNA:   3'- -GCCU--------GGUUugUACG-CUGCGCGACgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.