Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 49084 | 0.75 | 0.243876 |
Target: 5'- gGGGCCGAAa--GCGGCGUcuauuucGCUGCCGg -3' miRNA: 3'- gCCUGGUUUguaCGCUGCG-------CGACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 13350 | 1.09 | 0.000985 |
Target: 5'- cCGGACCAAACAUGCGACGCGCUGCCGu -3' miRNA: 3'- -GCCUGGUUUGUACGCUGCGCGACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 45925 | 0.66 | 0.707973 |
Target: 5'- uCGGaaGCgAAGCAaGCGACGCcGCagGCUGg -3' miRNA: 3'- -GCC--UGgUUUGUaCGCUGCG-CGa-CGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 5459 | 0.66 | 0.707973 |
Target: 5'- uGGGUCAGGCAgGCGGCGuCGCccGCCc -3' miRNA: 3'- gCCUGGUUUGUaCGCUGC-GCGa-CGGc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 30003 | 0.66 | 0.686571 |
Target: 5'- cCGGugCAcucugGCGACGCGaUGCUGc -3' miRNA: 3'- -GCCugGUuuguaCGCUGCGCgACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 31093 | 0.66 | 0.664965 |
Target: 5'- cCGGuCCuuGCG-GCaAUGCGCUGCUGc -3' miRNA: 3'- -GCCuGGuuUGUaCGcUGCGCGACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 9651 | 0.67 | 0.654112 |
Target: 5'- cCGGcaacGCCAAcgcGCuggGCGGCGUGggGCCGg -3' miRNA: 3'- -GCC----UGGUU---UGua-CGCUGCGCgaCGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 45100 | 0.67 | 0.650852 |
Target: 5'- uGGACCGcgccaucuuguucaGGCucuCGAC-CGCUGCCGg -3' miRNA: 3'- gCCUGGU--------------UUGuacGCUGcGCGACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 48484 | 0.67 | 0.643239 |
Target: 5'- --cAUCGAGCGcUGCGACGCcGCUGUCc -3' miRNA: 3'- gccUGGUUUGU-ACGCUGCG-CGACGGc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 23879 | 0.67 | 0.643239 |
Target: 5'- gCGGACCGAGCuccucGaCGAuCGCGUccgcagguuUGCCGu -3' miRNA: 3'- -GCCUGGUUUGua---C-GCU-GCGCG---------ACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 18035 | 0.67 | 0.632356 |
Target: 5'- aCGGGCCAuGCGauagGCGGCGag-UGCCGu -3' miRNA: 3'- -GCCUGGUuUGUa---CGCUGCgcgACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 49632 | 0.68 | 0.588915 |
Target: 5'- aGGcGCCAAcgaucGCAacuuCGACGaCGCUGCCGa -3' miRNA: 3'- gCC-UGGUU-----UGUac--GCUGC-GCGACGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 36695 | 0.68 | 0.578121 |
Target: 5'- cCGGAaccaacauUCGAugAUGCgGAUGCGCUGgCGc -3' miRNA: 3'- -GCCU--------GGUUugUACG-CUGCGCGACgGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 27666 | 0.68 | 0.535461 |
Target: 5'- uCGcGACCAccuCAUGCGugGCGCcgaGCUu -3' miRNA: 3'- -GC-CUGGUuu-GUACGCugCGCGa--CGGc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 30526 | 0.69 | 0.523915 |
Target: 5'- gGcGACCuu-CGcugccgcugccgcUGCGACGCGCUGCUc -3' miRNA: 3'- gC-CUGGuuuGU-------------ACGCUGCGCGACGGc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 8175 | 0.7 | 0.425189 |
Target: 5'- aGGGCCAGucccugcucacuGCccgGCGGCGCGC-GCCu -3' miRNA: 3'- gCCUGGUU------------UGua-CGCUGCGCGaCGGc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 47963 | 0.72 | 0.362455 |
Target: 5'- gCGGAgacauCCAGACcgGCaccGACGCGCUGaCUGa -3' miRNA: 3'- -GCCU-----GGUUUGuaCG---CUGCGCGAC-GGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 22623 | 0.73 | 0.314024 |
Target: 5'- --uGCCGAGCcccGCGACGCGCUGCa- -3' miRNA: 3'- gccUGGUUUGua-CGCUGCGCGACGgc -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 20808 | 0.73 | 0.299006 |
Target: 5'- gCGGACCGuguugGUGACGCGCaucGCCGu -3' miRNA: 3'- -GCCUGGUuuguaCGCUGCGCGa--CGGC- -5' |
|||||||
12432 | 3' | -56.1 | NC_003324.1 | + | 23773 | 0.67 | 0.621473 |
Target: 5'- gGGuCCGAuUcgGCGGCGCGUucgGCCu -3' miRNA: 3'- gCCuGGUUuGuaCGCUGCGCGa--CGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home