miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12432 3' -56.1 NC_003324.1 + 7814 0.67 0.621473
Target:  5'- uCGGACauaggCAGGcCAUGCGGcCGUGCUGaCCu -3'
miRNA:   3'- -GCCUG-----GUUU-GUACGCU-GCGCGAC-GGc -5'
12432 3' -56.1 NC_003324.1 + 23773 0.67 0.621473
Target:  5'- gGGuCCGAuUcgGCGGCGCGUucgGCCu -3'
miRNA:   3'- gCCuGGUUuGuaCGCUGCGCGa--CGGc -5'
12432 3' -56.1 NC_003324.1 + 50108 0.67 0.599743
Target:  5'- cCGGAgCCGAuCA-GCGGCcccaGCGCUuGCCGa -3'
miRNA:   3'- -GCCU-GGUUuGUaCGCUG----CGCGA-CGGC- -5'
12432 3' -56.1 NC_003324.1 + 49632 0.68 0.588915
Target:  5'- aGGcGCCAAcgaucGCAacuuCGACGaCGCUGCCGa -3'
miRNA:   3'- gCC-UGGUU-----UGUac--GCUGC-GCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 36695 0.68 0.578121
Target:  5'- cCGGAaccaacauUCGAugAUGCgGAUGCGCUGgCGc -3'
miRNA:   3'- -GCCU--------GGUUugUACG-CUGCGCGACgGC- -5'
12432 3' -56.1 NC_003324.1 + 9230 0.68 0.578121
Target:  5'- -cGACCGcuauuUGCGGCGCggugauGCUGCCGg -3'
miRNA:   3'- gcCUGGUuugu-ACGCUGCG------CGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 27666 0.68 0.535461
Target:  5'- uCGcGACCAccuCAUGCGugGCGCcgaGCUu -3'
miRNA:   3'- -GC-CUGGUuu-GUACGCugCGCGa--CGGc -5'
12432 3' -56.1 NC_003324.1 + 30526 0.69 0.523915
Target:  5'- gGcGACCuu-CGcugccgcugccgcUGCGACGCGCUGCUc -3'
miRNA:   3'- gC-CUGGuuuGU-------------ACGCUGCGCGACGGc -5'
12432 3' -56.1 NC_003324.1 + 4662 0.69 0.514539
Target:  5'- cCGGGCCGAcauCAUGCGggccuggaccuGCGCGC-GCuCGa -3'
miRNA:   3'- -GCCUGGUUu--GUACGC-----------UGCGCGaCG-GC- -5'
12432 3' -56.1 NC_003324.1 + 329 0.69 0.504203
Target:  5'- aGGAaCGAACcgGCGAUGCgGCcGCCa -3'
miRNA:   3'- gCCUgGUUUGuaCGCUGCG-CGaCGGc -5'
12432 3' -56.1 NC_003324.1 + 7245 0.7 0.47376
Target:  5'- uGGAUCAGuugaauuuccGCAUcCGACGUGgUGCCGa -3'
miRNA:   3'- gCCUGGUU----------UGUAcGCUGCGCgACGGC- -5'
12432 3' -56.1 NC_003324.1 + 19477 0.7 0.47376
Target:  5'- -cGACCucauGCAcggcGCGACGCGC-GCCGg -3'
miRNA:   3'- gcCUGGuu--UGUa---CGCUGCGCGaCGGC- -5'
12432 3' -56.1 NC_003324.1 + 18731 0.7 0.434668
Target:  5'- aGGGCaCGucCGguuucacugGCGACGCGCUGCgGg -3'
miRNA:   3'- gCCUG-GUuuGUa--------CGCUGCGCGACGgC- -5'
12432 3' -56.1 NC_003324.1 + 8175 0.7 0.425189
Target:  5'- aGGGCCAGucccugcucacuGCccgGCGGCGCGC-GCCu -3'
miRNA:   3'- gCCUGGUU------------UGua-CGCUGCGCGaCGGc -5'
12432 3' -56.1 NC_003324.1 + 47963 0.72 0.362455
Target:  5'- gCGGAgacauCCAGACcgGCaccGACGCGCUGaCUGa -3'
miRNA:   3'- -GCCU-----GGUUUGuaCG---CUGCGCGAC-GGC- -5'
12432 3' -56.1 NC_003324.1 + 33455 0.72 0.337608
Target:  5'- aGuGGCCGGAguUGCG-CGCGgaGCCGg -3'
miRNA:   3'- gC-CUGGUUUguACGCuGCGCgaCGGC- -5'
12432 3' -56.1 NC_003324.1 + 22623 0.73 0.314024
Target:  5'- --uGCCGAGCcccGCGACGCGCUGCa- -3'
miRNA:   3'- gccUGGUUUGua-CGCUGCGCGACGgc -5'
12432 3' -56.1 NC_003324.1 + 20808 0.73 0.299006
Target:  5'- gCGGACCGuguugGUGACGCGCaucGCCGu -3'
miRNA:   3'- -GCCUGGUuuguaCGCUGCGCGa--CGGC- -5'
12432 3' -56.1 NC_003324.1 + 32394 0.74 0.257305
Target:  5'- aGGAuCCGGAgAUGCGGCGCcGCgcagagGCCGu -3'
miRNA:   3'- gCCU-GGUUUgUACGCUGCG-CGa-----CGGC- -5'
12432 3' -56.1 NC_003324.1 + 49084 0.75 0.243876
Target:  5'- gGGGCCGAAa--GCGGCGUcuauuucGCUGCCGg -3'
miRNA:   3'- gCCUGGUUUguaCGCUGCG-------CGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.