miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12432 3' -56.1 NC_003324.1 + 40667 0.65 0.715399
Target:  5'- cCGGACCAcaaccacaucgggcGACAUGaCGACaCGguagUGCCGa -3'
miRNA:   3'- -GCCUGGU--------------UUGUAC-GCUGcGCg---ACGGC- -5'
12432 3' -56.1 NC_003324.1 + 38178 0.66 0.707973
Target:  5'- aCGGucACCAGcACGgcgcCGACGCGCUucGCCa -3'
miRNA:   3'- -GCC--UGGUU-UGUac--GCUGCGCGA--CGGc -5'
12432 3' -56.1 NC_003324.1 + 5459 0.66 0.707973
Target:  5'- uGGGUCAGGCAgGCGGCGuCGCccGCCc -3'
miRNA:   3'- gCCUGGUUUGUaCGCUGC-GCGa-CGGc -5'
12432 3' -56.1 NC_003324.1 + 45925 0.66 0.707973
Target:  5'- uCGGaaGCgAAGCAaGCGACGCcGCagGCUGg -3'
miRNA:   3'- -GCC--UGgUUUGUaCGCUGCG-CGa-CGGC- -5'
12432 3' -56.1 NC_003324.1 + 3069 0.66 0.707973
Target:  5'- uGGGCCGcuCGaaGCGACGaCGCaaGCCGa -3'
miRNA:   3'- gCCUGGUuuGUa-CGCUGC-GCGa-CGGC- -5'
12432 3' -56.1 NC_003324.1 + 19206 0.66 0.697303
Target:  5'- gCGGGCCuGACcgGgauCGACaaGCGCaaUGCCGa -3'
miRNA:   3'- -GCCUGGuUUGuaC---GCUG--CGCG--ACGGC- -5'
12432 3' -56.1 NC_003324.1 + 35718 0.66 0.686571
Target:  5'- cCGaGGCCAAACAgcagcagaugaUGCuGCGCGCagcagaaGCCGa -3'
miRNA:   3'- -GC-CUGGUUUGU-----------ACGcUGCGCGa------CGGC- -5'
12432 3' -56.1 NC_003324.1 + 27203 0.66 0.686571
Target:  5'- aCGGGCUcaaGAGCGagaGCGAcCGCGCUGgUGu -3'
miRNA:   3'- -GCCUGG---UUUGUa--CGCU-GCGCGACgGC- -5'
12432 3' -56.1 NC_003324.1 + 30003 0.66 0.686571
Target:  5'- cCGGugCAcucugGCGACGCGaUGCUGc -3'
miRNA:   3'- -GCCugGUuuguaCGCUGCGCgACGGC- -5'
12432 3' -56.1 NC_003324.1 + 28590 0.66 0.675788
Target:  5'- uCGGuCCGAAgG-GCGccCGCGUUGCCa -3'
miRNA:   3'- -GCCuGGUUUgUaCGCu-GCGCGACGGc -5'
12432 3' -56.1 NC_003324.1 + 20907 0.66 0.675788
Target:  5'- uGGACCcgaccgGAACG-GCGAUGCGC-GUCa -3'
miRNA:   3'- gCCUGG------UUUGUaCGCUGCGCGaCGGc -5'
12432 3' -56.1 NC_003324.1 + 31093 0.66 0.664965
Target:  5'- cCGGuCCuuGCG-GCaAUGCGCUGCUGc -3'
miRNA:   3'- -GCCuGGuuUGUaCGcUGCGCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 3373 0.66 0.663881
Target:  5'- gCGGAUCuuuGACAUGUuuaugccGACG-GUUGCCGc -3'
miRNA:   3'- -GCCUGGu--UUGUACG-------CUGCgCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 9651 0.67 0.654112
Target:  5'- cCGGcaacGCCAAcgcGCuggGCGGCGUGggGCCGg -3'
miRNA:   3'- -GCC----UGGUU---UGua-CGCUGCGCgaCGGC- -5'
12432 3' -56.1 NC_003324.1 + 17706 0.67 0.653025
Target:  5'- uCGGGcCCGAGCucgGCGGCaucgugcucaacgGCGC-GCCGg -3'
miRNA:   3'- -GCCU-GGUUUGua-CGCUG-------------CGCGaCGGC- -5'
12432 3' -56.1 NC_003324.1 + 45100 0.67 0.650852
Target:  5'- uGGACCGcgccaucuuguucaGGCucuCGAC-CGCUGCCGg -3'
miRNA:   3'- gCCUGGU--------------UUGuacGCUGcGCGACGGC- -5'
12432 3' -56.1 NC_003324.1 + 23879 0.67 0.643239
Target:  5'- gCGGACCGAGCuccucGaCGAuCGCGUccgcagguuUGCCGu -3'
miRNA:   3'- -GCCUGGUUUGua---C-GCU-GCGCG---------ACGGC- -5'
12432 3' -56.1 NC_003324.1 + 48484 0.67 0.643239
Target:  5'- --cAUCGAGCGcUGCGACGCcGCUGUCc -3'
miRNA:   3'- gccUGGUUUGU-ACGCUGCG-CGACGGc -5'
12432 3' -56.1 NC_003324.1 + 18035 0.67 0.632356
Target:  5'- aCGGGCCAuGCGauagGCGGCGag-UGCCGu -3'
miRNA:   3'- -GCCUGGUuUGUa---CGCUGCgcgACGGC- -5'
12432 3' -56.1 NC_003324.1 + 42380 0.67 0.631267
Target:  5'- cCGGcACguGGCAgGCGGCGCacucagcGUUGCCGa -3'
miRNA:   3'- -GCC-UGguUUGUaCGCUGCG-------CGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.