miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12438 3' -55.1 NC_003324.1 + 26868 0.66 0.76672
Target:  5'- cCCuuuUCAgGCUCaagGgUGACGCCGGGc -3'
miRNA:   3'- -GGu--AGU-CGAGcaaCgACUGCGGCCUc -5'
12438 3' -55.1 NC_003324.1 + 50447 0.66 0.75655
Target:  5'- ---gCAGCUCGcaggGCUGcGCGauCCGGAGg -3'
miRNA:   3'- gguaGUCGAGCaa--CGAC-UGC--GGCCUC- -5'
12438 3' -55.1 NC_003324.1 + 54272 0.66 0.753474
Target:  5'- gCAUCAGCgccgagcCGUUGCUGgaaggccugcgucuGCGCCGu-- -3'
miRNA:   3'- gGUAGUCGa------GCAACGAC--------------UGCGGCcuc -5'
12438 3' -55.1 NC_003324.1 + 25075 0.66 0.745219
Target:  5'- -gGUCAGCUucucaaacccgacUGgcgucuggaUGUUGGCGCCGGGGu -3'
miRNA:   3'- ggUAGUCGA-------------GCa--------ACGACUGCGGCCUC- -5'
12438 3' -55.1 NC_003324.1 + 49834 0.66 0.725332
Target:  5'- gUCA-CAGCUCGUgccgcgGCUGGCaucaaGgCGGAGu -3'
miRNA:   3'- -GGUaGUCGAGCAa-----CGACUG-----CgGCCUC- -5'
12438 3' -55.1 NC_003324.1 + 47973 0.66 0.725332
Target:  5'- gCCAUCGGCgcagcacgguUCGgcaaaggucCUGACGCCGGu- -3'
miRNA:   3'- -GGUAGUCG----------AGCaac------GACUGCGGCCuc -5'
12438 3' -55.1 NC_003324.1 + 10183 0.66 0.714727
Target:  5'- cCCGUCAGCuUCGgcuagUGCUcaucGGCGCCa--- -3'
miRNA:   3'- -GGUAGUCG-AGCa----ACGA----CUGCGGccuc -5'
12438 3' -55.1 NC_003324.1 + 57129 0.66 0.714727
Target:  5'- gCCAUgaAGCUCGaaacccUGCUGACGCCc--- -3'
miRNA:   3'- -GGUAg-UCGAGCa-----ACGACUGCGGccuc -5'
12438 3' -55.1 NC_003324.1 + 31321 0.67 0.704041
Target:  5'- gCAgugCGGCcggCGgcGCUGGCGCUGGcGGg -3'
miRNA:   3'- gGUa--GUCGa--GCaaCGACUGCGGCC-UC- -5'
12438 3' -55.1 NC_003324.1 + 56061 0.67 0.693286
Target:  5'- gCCGUCGGCUUccagGCUGGCGaacccgcgaUGGAGc -3'
miRNA:   3'- -GGUAGUCGAGcaa-CGACUGCg--------GCCUC- -5'
12438 3' -55.1 NC_003324.1 + 21471 0.68 0.649791
Target:  5'- gCAUagAGCUCGUUGCcc-UGCCGGAu -3'
miRNA:   3'- gGUAg-UCGAGCAACGacuGCGGCCUc -5'
12438 3' -55.1 NC_003324.1 + 38802 0.68 0.638851
Target:  5'- uCCuUCGGCUCGaUGaUGACGCCGugcGGGu -3'
miRNA:   3'- -GGuAGUCGAGCaACgACUGCGGC---CUC- -5'
12438 3' -55.1 NC_003324.1 + 25607 0.68 0.595127
Target:  5'- uCUGUCGGC-CGcUGCUG-CGCCGGc- -3'
miRNA:   3'- -GGUAGUCGaGCaACGACuGCGGCCuc -5'
12438 3' -55.1 NC_003324.1 + 20005 0.69 0.551892
Target:  5'- aCCAUCAGCcaggUGUUGCUguggagcuccGugGCCuGAGc -3'
miRNA:   3'- -GGUAGUCGa---GCAACGA----------CugCGGcCUC- -5'
12438 3' -55.1 NC_003324.1 + 43646 0.69 0.541222
Target:  5'- -aAUCGGCUgacguugcgcggCGUgugGCUGAUGCUGGAa -3'
miRNA:   3'- ggUAGUCGA------------GCAa--CGACUGCGGCCUc -5'
12438 3' -55.1 NC_003324.1 + 54353 0.79 0.152811
Target:  5'- uCCAgcaaCGGCUCGgcGCUGAUGCCGGu- -3'
miRNA:   3'- -GGUa---GUCGAGCaaCGACUGCGGCCuc -5'
12438 3' -55.1 NC_003324.1 + 18744 1.09 0.001085
Target:  5'- uCCAUCAGCUCGUUGCUGACGCCGGAGc -3'
miRNA:   3'- -GGUAGUCGAGCAACGACUGCGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.