miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12438 5' -54.9 NC_003324.1 + 18782 1.12 0.000893
Target:  5'- cUCCUCGAUCUCGGCAACGAUGCGCGGg -3'
miRNA:   3'- -AGGAGCUAGAGCCGUUGCUACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 22780 0.79 0.157811
Target:  5'- cCUUCGAcgagCUCGGCGugGAUGCGCu- -3'
miRNA:   3'- aGGAGCUa---GAGCCGUugCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 26650 0.79 0.157811
Target:  5'- gUC-CGAUCUCGGCGAgGAUGUGCGu -3'
miRNA:   3'- aGGaGCUAGAGCCGUUgCUACGCGCc -5'
12438 5' -54.9 NC_003324.1 + 31014 0.77 0.228748
Target:  5'- cUCgUCGAUCgcUUGGUAGCGAccgGCGCGGu -3'
miRNA:   3'- -AGgAGCUAG--AGCCGUUGCUa--CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 13447 0.76 0.262634
Target:  5'- aUCCUCGAUCcguaCGGCAGCGcGUcgcauguuugguccgGCGCGGc -3'
miRNA:   3'- -AGGAGCUAGa---GCCGUUGC-UA---------------CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 8746 0.74 0.317077
Target:  5'- aUCCa-GAUCUUGGCGGCGGUGU-CGGa -3'
miRNA:   3'- -AGGagCUAGAGCCGUUGCUACGcGCC- -5'
12438 5' -54.9 NC_003324.1 + 15118 0.72 0.438282
Target:  5'- gCCaUCGGUCUCGGCGuCGAcacgGCGCc- -3'
miRNA:   3'- aGG-AGCUAGAGCCGUuGCUa---CGCGcc -5'
12438 5' -54.9 NC_003324.1 + 44287 0.71 0.45766
Target:  5'- gCCUCGAUCUgucucgacgaacCGGgcGCGGUgGCGCGGc -3'
miRNA:   3'- aGGAGCUAGA------------GCCguUGCUA-CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 31845 0.71 0.45766
Target:  5'- cUUCUUGGcauUCUCGGCGAUGAucUGCGCc- -3'
miRNA:   3'- -AGGAGCU---AGAGCCGUUGCU--ACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 17710 0.71 0.45766
Target:  5'- aUCCUCGGgcccgagCUCGGCGgcaucgugcucaACGgcGCGcCGGg -3'
miRNA:   3'- -AGGAGCUa------GAGCCGU------------UGCuaCGC-GCC- -5'
12438 5' -54.9 NC_003324.1 + 51988 0.7 0.51835
Target:  5'- aUCUCGAUCUCGuCGAUguucugcuuGAUGaCGCGGa -3'
miRNA:   3'- aGGAGCUAGAGCcGUUG---------CUAC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 16431 0.7 0.51835
Target:  5'- gUCCUggacgacgCGAUCgaCGGCAACGccGuCGCGGa -3'
miRNA:   3'- -AGGA--------GCUAGa-GCCGUUGCuaC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 57037 0.7 0.5393
Target:  5'- -gCUgGGgagCGGCGGCGAggGCGCGGa -3'
miRNA:   3'- agGAgCUagaGCCGUUGCUa-CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 1516 0.7 0.549883
Target:  5'- gCCagCGAggaUCcggCGGCAGUGGUGCGCGGc -3'
miRNA:   3'- aGGa-GCU---AGa--GCCGUUGCUACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 17555 0.7 0.549883
Target:  5'- aCCaaaGGUC-CGGCAugcCGAUGCGCGa -3'
miRNA:   3'- aGGag-CUAGaGCCGUu--GCUACGCGCc -5'
12438 5' -54.9 NC_003324.1 + 26482 0.7 0.560529
Target:  5'- -gCUCGAcCUCGGCAGCGcucgacauaccGUcgaauugcgugGCGCGGg -3'
miRNA:   3'- agGAGCUaGAGCCGUUGC-----------UA-----------CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 43651 0.69 0.581983
Target:  5'- cCCUCaa--UCGGCuGACGuUGCGCGGc -3'
miRNA:   3'- aGGAGcuagAGCCG-UUGCuACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 44505 0.68 0.645957
Target:  5'- uUCC-CGAUCggaCGGCAcgcgcauGCGGUGCGUc- -3'
miRNA:   3'- -AGGaGCUAGa--GCCGU-------UGCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 29207 0.68 0.657895
Target:  5'- cUUCUCG-UC-CGGCAgcacuACGGUGCGCu- -3'
miRNA:   3'- -AGGAGCuAGaGCCGU-----UGCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 29729 0.68 0.657895
Target:  5'- -aCUCGAUCccggcucaggCGGCGGCGuUGCGCc- -3'
miRNA:   3'- agGAGCUAGa---------GCCGUUGCuACGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.