miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12438 5' -54.9 NC_003324.1 + 28335 0.66 0.78717
Target:  5'- uUCCacCGAUC-CGGCAccagucgcagcaguCGAUGaCGCGGc -3'
miRNA:   3'- -AGGa-GCUAGaGCCGUu-------------GCUAC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 29207 0.68 0.657895
Target:  5'- cUUCUCG-UC-CGGCAgcacuACGGUGCGCu- -3'
miRNA:   3'- -AGGAGCuAGaGCCGU-----UGCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 29729 0.68 0.657895
Target:  5'- -aCUCGAUCccggcucaggCGGCGGCGuUGCGCc- -3'
miRNA:   3'- agGAGCUAGa---------GCCGUUGCuACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 30094 0.68 0.668723
Target:  5'- uUCCUCGAcgccUUCGGuCAGCGAUuGCGaaGGg -3'
miRNA:   3'- -AGGAGCUa---GAGCC-GUUGCUA-CGCg-CC- -5'
12438 5' -54.9 NC_003324.1 + 30250 0.66 0.792979
Target:  5'- aCCgcCGAcaccaUCGGCGAUGAUGCG-GGc -3'
miRNA:   3'- aGGa-GCUag---AGCCGUUGCUACGCgCC- -5'
12438 5' -54.9 NC_003324.1 + 31014 0.77 0.228748
Target:  5'- cUCgUCGAUCgcUUGGUAGCGAccgGCGCGGu -3'
miRNA:   3'- -AGgAGCUAG--AGCCGUUGCUa--CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 31845 0.71 0.45766
Target:  5'- cUUCUUGGcauUCUCGGCGAUGAucUGCGCc- -3'
miRNA:   3'- -AGGAGCU---AGAGCCGUUGCU--ACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 38003 0.66 0.763391
Target:  5'- gCCggagCGGUUgCGGCGcACGggGCGCGu -3'
miRNA:   3'- aGGa---GCUAGaGCCGU-UGCuaCGCGCc -5'
12438 5' -54.9 NC_003324.1 + 39773 0.67 0.732621
Target:  5'- -gCUCGAugaUCUCGGC-ACGGUGCa--- -3'
miRNA:   3'- agGAGCU---AGAGCCGuUGCUACGcgcc -5'
12438 5' -54.9 NC_003324.1 + 40068 0.66 0.763391
Target:  5'- cCCUCGccacgCUCGGCGcgACGGacuuggagauUGCGCaGGc -3'
miRNA:   3'- aGGAGCua---GAGCCGU--UGCU----------ACGCG-CC- -5'
12438 5' -54.9 NC_003324.1 + 41343 0.66 0.783266
Target:  5'- gCCUCGAaaUCGGCGcUGG-GgGCGGc -3'
miRNA:   3'- aGGAGCUagAGCCGUuGCUaCgCGCC- -5'
12438 5' -54.9 NC_003324.1 + 43651 0.69 0.581983
Target:  5'- cCCUCaa--UCGGCuGACGuUGCGCGGc -3'
miRNA:   3'- aGGAGcuagAGCCG-UUGCuACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 44287 0.71 0.45766
Target:  5'- gCCUCGAUCUgucucgacgaacCGGgcGCGGUgGCGCGGc -3'
miRNA:   3'- aGGAGCUAGA------------GCCguUGCUA-CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 44505 0.68 0.645957
Target:  5'- uUCC-CGAUCggaCGGCAcgcgcauGCGGUGCGUc- -3'
miRNA:   3'- -AGGaGCUAGa--GCCGU-------UGCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 51988 0.7 0.51835
Target:  5'- aUCUCGAUCUCGuCGAUguucugcuuGAUGaCGCGGa -3'
miRNA:   3'- aGGAGCUAGAGCcGUUG---------CUAC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 54434 0.68 0.679518
Target:  5'- gCCUCGA-CUgggucauagcCGGCGGCGAga-GCGGa -3'
miRNA:   3'- aGGAGCUaGA----------GCCGUUGCUacgCGCC- -5'
12438 5' -54.9 NC_003324.1 + 57037 0.7 0.5393
Target:  5'- -gCUgGGgagCGGCGGCGAggGCGCGGa -3'
miRNA:   3'- agGAgCUagaGCCGUUGCUa-CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 57398 0.66 0.782286
Target:  5'- gUCCUCacugcugGAgggCUCGGCGgagGCGA-GgGCGGc -3'
miRNA:   3'- -AGGAG-------CUa--GAGCCGU---UGCUaCgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.