miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12439 3' -58.5 NC_003324.1 + 1523 0.75 0.133575
Target:  5'- aGGAUcCGGCGGCagugGUGCGCGGCgcuaUGGCc -3'
miRNA:   3'- -UUUAuGCCGCCGa---CGUGCGCCG----ACCG- -5'
12439 3' -58.5 NC_003324.1 + 3539 0.66 0.507788
Target:  5'- ---aGCGGaacCGGCUGCAaaCGGCgcuucggUGGCg -3'
miRNA:   3'- uuuaUGCC---GCCGACGUgcGCCG-------ACCG- -5'
12439 3' -58.5 NC_003324.1 + 4734 0.7 0.280272
Target:  5'- -----aGGCGGCUGCuACGgCGGaaGGCc -3'
miRNA:   3'- uuuaugCCGCCGACG-UGC-GCCgaCCG- -5'
12439 3' -58.5 NC_003324.1 + 6275 0.7 0.317122
Target:  5'- -----aGGCGaGCgagauCAUGCGGCUGGCc -3'
miRNA:   3'- uuuaugCCGC-CGac---GUGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 7653 0.68 0.401357
Target:  5'- ---cGCGcCGGCaGUGC-CGGCUGGCg -3'
miRNA:   3'- uuuaUGCcGCCGaCGUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 8197 0.69 0.349146
Target:  5'- ----cCGGCGGC-GCGCGC--CUGGCa -3'
miRNA:   3'- uuuauGCCGCCGaCGUGCGccGACCG- -5'
12439 3' -58.5 NC_003324.1 + 10392 0.69 0.324916
Target:  5'- --cUAgGaGCGGaUGCACGCGGCggaacguggUGGCg -3'
miRNA:   3'- uuuAUgC-CGCCgACGUGCGCCG---------ACCG- -5'
12439 3' -58.5 NC_003324.1 + 12989 0.71 0.246908
Target:  5'- ---cGCuGC-GCUGUuCGCGGCUGGCg -3'
miRNA:   3'- uuuaUGcCGcCGACGuGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 13150 0.71 0.266514
Target:  5'- ---gGCGGCGGCgGUAC-CGGCUG-Ca -3'
miRNA:   3'- uuuaUGCCGCCGaCGUGcGCCGACcG- -5'
12439 3' -58.5 NC_003324.1 + 14598 0.72 0.205799
Target:  5'- ----cCGGCGGC-GCAgGCGGUagcgUGGCg -3'
miRNA:   3'- uuuauGCCGCCGaCGUgCGCCG----ACCG- -5'
12439 3' -58.5 NC_003324.1 + 16146 0.66 0.508823
Target:  5'- ---aGCGGgGGCcGCGCcagGCaucGCUGGCa -3'
miRNA:   3'- uuuaUGCCgCCGaCGUG---CGc--CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 18997 1.08 0.000483
Target:  5'- gAAAUACGGCGGCUGCACGCGGCUGGCc -3'
miRNA:   3'- -UUUAUGCCGCCGACGUGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 19977 0.7 0.309469
Target:  5'- ---cACGGCGGCga-AU-CGGCUGGCu -3'
miRNA:   3'- uuuaUGCCGCCGacgUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 21092 0.7 0.280272
Target:  5'- ---cGCGGCGcguGCUGCgucggcuuccACGUcgGGCUGGCg -3'
miRNA:   3'- uuuaUGCCGC---CGACG----------UGCG--CCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 22692 0.7 0.280272
Target:  5'- ---cGCGG-GGCUcgGCaACGCGGCaGGCa -3'
miRNA:   3'- uuuaUGCCgCCGA--CG-UGCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 23551 0.68 0.41053
Target:  5'- ----gUGGCGGCggGCGCGCucGGCgacGGUa -3'
miRNA:   3'- uuuauGCCGCCGa-CGUGCG--CCGa--CCG- -5'
12439 3' -58.5 NC_003324.1 + 24041 0.66 0.519221
Target:  5'- ---gAUGGCGGCcuucucgGCAC-UGGCgGGCu -3'
miRNA:   3'- uuuaUGCCGCCGa------CGUGcGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 26802 0.69 0.349146
Target:  5'- ---gAC-GCGGCcGUGCGCuuGGCUGGCu -3'
miRNA:   3'- uuuaUGcCGCCGaCGUGCG--CCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 27853 0.7 0.309469
Target:  5'- gAGGUA-GGCGGC-GCGCGCuucguccucGCUGGCg -3'
miRNA:   3'- -UUUAUgCCGCCGaCGUGCGc--------CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 29242 0.66 0.498515
Target:  5'- ---gACGGCGGCUGUuCG-GGCcugcaucgccgGGCu -3'
miRNA:   3'- uuuaUGCCGCCGACGuGCgCCGa----------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.