Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12439 | 3' | -58.5 | NC_003324.1 | + | 57045 | 0.68 | 0.374636 |
Target: 5'- cGGGUugGGCugGGgaGCG-GCGGCgagGGCg -3' miRNA: 3'- -UUUAugCCG--CCgaCGUgCGCCGa--CCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 53196 | 0.7 | 0.280272 |
Target: 5'- -----gGGUGGUaGCugGCGGCcGGCu -3' miRNA: 3'- uuuaugCCGCCGaCGugCGCCGaCCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 48820 | 0.66 | 0.529701 |
Target: 5'- ---gAUGGCcugcagccugcuGGC-GCcgACGCGGUUGGCg -3' miRNA: 3'- uuuaUGCCG------------CCGaCG--UGCGCCGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 47713 | 0.69 | 0.324916 |
Target: 5'- cGAcgAUGGCGGCccgGUcgccgucauGCGCGGCgUGGUa -3' miRNA: 3'- -UUuaUGCCGCCGa--CG---------UGCGCCG-ACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 42387 | 0.68 | 0.401357 |
Target: 5'- ----cCGGCGcCcgGCACGUGGCaGGCg -3' miRNA: 3'- uuuauGCCGCcGa-CGUGCGCCGaCCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 39803 | 0.7 | 0.280272 |
Target: 5'- -cAUGUGGUGGCUGCAgaacCGCaGGCcgGGCa -3' miRNA: 3'- uuUAUGCCGCCGACGU----GCG-CCGa-CCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 39720 | 0.66 | 0.519221 |
Target: 5'- ----uCGGUGGCUGgcUACGCGaGCUuGCg -3' miRNA: 3'- uuuauGCCGCCGAC--GUGCGC-CGAcCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 36712 | 0.67 | 0.458273 |
Target: 5'- uGAUGCGGauGC-GCugGCG-CUGGUa -3' miRNA: 3'- uUUAUGCCgcCGaCGugCGCcGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 35314 | 0.67 | 0.448484 |
Target: 5'- ----cCGGCGGaUUGCGC-CGGCUGcuGCg -3' miRNA: 3'- uuuauGCCGCC-GACGUGcGCCGAC--CG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 35031 | 0.67 | 0.42926 |
Target: 5'- ---aGCGGCGGCgGCAgcaGCGGcCUGa- -3' miRNA: 3'- uuuaUGCCGCCGaCGUg--CGCC-GACcg -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 31320 | 0.76 | 0.113091 |
Target: 5'- cAGUGCGGcCGGCggcGCugGCG-CUGGCg -3' miRNA: 3'- uUUAUGCC-GCCGa--CGugCGCcGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 30421 | 0.66 | 0.498515 |
Target: 5'- cGAUugGGCcaGCUGCucGCGCGGgauCUGcGCa -3' miRNA: 3'- uUUAugCCGc-CGACG--UGCGCC---GAC-CG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 30312 | 0.76 | 0.122937 |
Target: 5'- ---gGCGGUGGCgucGCucgGCGCGuGCUGGCu -3' miRNA: 3'- uuuaUGCCGCCGa--CG---UGCGC-CGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 30114 | 0.68 | 0.374636 |
Target: 5'- ---gGCGGCGGCauggguggUGUugGUGGCgcaGCa -3' miRNA: 3'- uuuaUGCCGCCG--------ACGugCGCCGac-CG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 29887 | 0.75 | 0.141131 |
Target: 5'- uGGAUACGGCGcGaucuucgGCGCGCuGCUGGCc -3' miRNA: 3'- -UUUAUGCCGC-Cga-----CGUGCGcCGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 29470 | 0.68 | 0.419832 |
Target: 5'- ---cACGGCcgccuGGCUGCGgGCGcGUcgGGCg -3' miRNA: 3'- uuuaUGCCG-----CCGACGUgCGC-CGa-CCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 29242 | 0.66 | 0.498515 |
Target: 5'- ---gACGGCGGCUGUuCG-GGCcugcaucgccgGGCu -3' miRNA: 3'- uuuaUGCCGCCGACGuGCgCCGa----------CCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 27853 | 0.7 | 0.309469 |
Target: 5'- gAGGUA-GGCGGC-GCGCGCuucguccucGCUGGCg -3' miRNA: 3'- -UUUAUgCCGCCGaCGUGCGc--------CGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 26802 | 0.69 | 0.349146 |
Target: 5'- ---gAC-GCGGCcGUGCGCuuGGCUGGCu -3' miRNA: 3'- uuuaUGcCGCCGaCGUGCG--CCGACCG- -5' |
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12439 | 3' | -58.5 | NC_003324.1 | + | 24041 | 0.66 | 0.519221 |
Target: 5'- ---gAUGGCGGCcuucucgGCAC-UGGCgGGCu -3' miRNA: 3'- uuuaUGCCGCCGa------CGUGcGCCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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