miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12439 3' -58.5 NC_003324.1 + 48820 0.66 0.529701
Target:  5'- ---gAUGGCcugcagccugcuGGC-GCcgACGCGGUUGGCg -3'
miRNA:   3'- uuuaUGCCG------------CCGaCG--UGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 30312 0.76 0.122937
Target:  5'- ---gGCGGUGGCgucGCucgGCGCGuGCUGGCu -3'
miRNA:   3'- uuuaUGCCGCCGa--CG---UGCGC-CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 22692 0.7 0.280272
Target:  5'- ---cGCGG-GGCUcgGCaACGCGGCaGGCa -3'
miRNA:   3'- uuuaUGCCgCCGA--CG-UGCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 19977 0.7 0.309469
Target:  5'- ---cACGGCGGCga-AU-CGGCUGGCu -3'
miRNA:   3'- uuuaUGCCGCCGacgUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 47713 0.69 0.324916
Target:  5'- cGAcgAUGGCGGCccgGUcgccgucauGCGCGGCgUGGUa -3'
miRNA:   3'- -UUuaUGCCGCCGa--CG---------UGCGCCG-ACCG- -5'
12439 3' -58.5 NC_003324.1 + 30114 0.68 0.374636
Target:  5'- ---gGCGGCGGCauggguggUGUugGUGGCgcaGCa -3'
miRNA:   3'- uuuaUGCCGCCG--------ACGugCGCCGac-CG- -5'
12439 3' -58.5 NC_003324.1 + 31320 0.76 0.113091
Target:  5'- cAGUGCGGcCGGCggcGCugGCG-CUGGCg -3'
miRNA:   3'- uUUAUGCC-GCCGa--CGugCGCcGACCG- -5'
12439 3' -58.5 NC_003324.1 + 13150 0.71 0.266514
Target:  5'- ---gGCGGCGGCgGUAC-CGGCUG-Ca -3'
miRNA:   3'- uuuaUGCCGCCGaCGUGcGCCGACcG- -5'
12439 3' -58.5 NC_003324.1 + 10392 0.69 0.324916
Target:  5'- --cUAgGaGCGGaUGCACGCGGCggaacguggUGGCg -3'
miRNA:   3'- uuuAUgC-CGCCgACGUGCGCCG---------ACCG- -5'
12439 3' -58.5 NC_003324.1 + 57045 0.68 0.374636
Target:  5'- cGGGUugGGCugGGgaGCG-GCGGCgagGGCg -3'
miRNA:   3'- -UUUAugCCG--CCgaCGUgCGCCGa--CCG- -5'
12439 3' -58.5 NC_003324.1 + 39720 0.66 0.519221
Target:  5'- ----uCGGUGGCUGgcUACGCGaGCUuGCg -3'
miRNA:   3'- uuuauGCCGCCGAC--GUGCGC-CGAcCG- -5'
12439 3' -58.5 NC_003324.1 + 42387 0.68 0.401357
Target:  5'- ----cCGGCGcCcgGCACGUGGCaGGCg -3'
miRNA:   3'- uuuauGCCGCcGa-CGUGCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 39803 0.7 0.280272
Target:  5'- -cAUGUGGUGGCUGCAgaacCGCaGGCcgGGCa -3'
miRNA:   3'- uuUAUGCCGCCGACGU----GCG-CCGa-CCG- -5'
12439 3' -58.5 NC_003324.1 + 29887 0.75 0.141131
Target:  5'- uGGAUACGGCGcGaucuucgGCGCGCuGCUGGCc -3'
miRNA:   3'- -UUUAUGCCGC-Cga-----CGUGCGcCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 4734 0.7 0.280272
Target:  5'- -----aGGCGGCUGCuACGgCGGaaGGCc -3'
miRNA:   3'- uuuaugCCGCCGACG-UGC-GCCgaCCG- -5'
12439 3' -58.5 NC_003324.1 + 29470 0.68 0.419832
Target:  5'- ---cACGGCcgccuGGCUGCGgGCGcGUcgGGCg -3'
miRNA:   3'- uuuaUGCCG-----CCGACGUgCGC-CGa-CCG- -5'
12439 3' -58.5 NC_003324.1 + 23551 0.68 0.41053
Target:  5'- ----gUGGCGGCggGCGCGCucGGCgacGGUa -3'
miRNA:   3'- uuuauGCCGCCGa-CGUGCG--CCGa--CCG- -5'
12439 3' -58.5 NC_003324.1 + 7653 0.68 0.401357
Target:  5'- ---cGCGcCGGCaGUGC-CGGCUGGCg -3'
miRNA:   3'- uuuaUGCcGCCGaCGUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 8197 0.69 0.349146
Target:  5'- ----cCGGCGGC-GCGCGC--CUGGCa -3'
miRNA:   3'- uuuauGCCGCCGaCGUGCGccGACCG- -5'
12439 3' -58.5 NC_003324.1 + 21092 0.7 0.280272
Target:  5'- ---cGCGGCGcguGCUGCgucggcuuccACGUcgGGCUGGCg -3'
miRNA:   3'- uuuaUGCCGC---CGACG----------UGCG--CCGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.