miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 3' -56 NC_003324.1 + 157 0.66 0.685838
Target:  5'- uUCGGGauaGgGGAUAUuccuguagacgGCGC-GCGCCa -3'
miRNA:   3'- -AGCCCguaCgCCUAUA-----------CGUGaCGCGG- -5'
12445 3' -56 NC_003324.1 + 1512 0.68 0.559159
Target:  5'- cCGGGCcagcgaggauccgGCGGcagugGUGCGCgGCGCUa -3'
miRNA:   3'- aGCCCGua-----------CGCCua---UACGUGaCGCGG- -5'
12445 3' -56 NC_003324.1 + 4662 0.66 0.684752
Target:  5'- cCGGGCcgacaucAUGCGGGccUGgAcCUGCGCg -3'
miRNA:   3'- aGCCCG-------UACGCCUauACgU-GACGCGg -5'
12445 3' -56 NC_003324.1 + 6333 0.67 0.620174
Target:  5'- cUUGGGCAUGUcuuaccucuGGcgcuUGCugcgcugcuGCUGCGCCu -3'
miRNA:   3'- -AGCCCGUACG---------CCuau-ACG---------UGACGCGG- -5'
12445 3' -56 NC_003324.1 + 8439 0.68 0.554854
Target:  5'- -aGGuGCAgGCGGAUuugcgGCGCaUGCGCg -3'
miRNA:   3'- agCC-CGUaCGCCUAua---CGUG-ACGCGg -5'
12445 3' -56 NC_003324.1 + 10232 0.7 0.451486
Target:  5'- gUCGGGCAUugucucGCGGAUuUGUuccgGCGUCg -3'
miRNA:   3'- -AGCCCGUA------CGCCUAuACGuga-CGCGG- -5'
12445 3' -56 NC_003324.1 + 12137 0.78 0.129917
Target:  5'- --uGGC-UGCGGuAUAUGCGCUGCGUCg -3'
miRNA:   3'- agcCCGuACGCC-UAUACGUGACGCGG- -5'
12445 3' -56 NC_003324.1 + 20578 0.7 0.422541
Target:  5'- uUCuGGCGaGCGGGauccgGUGCugUGgCGCCg -3'
miRNA:   3'- -AGcCCGUaCGCCUa----UACGugAC-GCGG- -5'
12445 3' -56 NC_003324.1 + 22065 0.66 0.664041
Target:  5'- gCGGGCuauggcgacuAUGcCGGcuccaagGUGCAUcGCGCCg -3'
miRNA:   3'- aGCCCG----------UAC-GCCua-----UACGUGaCGCGG- -5'
12445 3' -56 NC_003324.1 + 24005 0.66 0.664041
Target:  5'- -aGGGCG-GCGGuaggGCuGCUGCGUg -3'
miRNA:   3'- agCCCGUaCGCCuauaCG-UGACGCGg -5'
12445 3' -56 NC_003324.1 + 24053 0.71 0.374243
Target:  5'- cUC-GGCAcugGCGGGcUuuaccuucucgccgGUGCGCUGCGCCa -3'
miRNA:   3'- -AGcCCGUa--CGCCU-A--------------UACGUGACGCGG- -5'
12445 3' -56 NC_003324.1 + 24287 0.69 0.502009
Target:  5'- cUGGGCAcgGCGGAgcuugGCGaagGCGUCg -3'
miRNA:   3'- aGCCCGUa-CGCCUaua--CGUga-CGCGG- -5'
12445 3' -56 NC_003324.1 + 24401 1.13 0.000439
Target:  5'- gUCGGGCAUGCGGAUAUGCACUGCGCCg -3'
miRNA:   3'- -AGCCCGUACGCCUAUACGUGACGCGG- -5'
12445 3' -56 NC_003324.1 + 24428 0.7 0.461374
Target:  5'- gUCGGGCgAUGCGaa----CAUUGCGCCg -3'
miRNA:   3'- -AGCCCG-UACGCcuauacGUGACGCGG- -5'
12445 3' -56 NC_003324.1 + 25196 0.68 0.565634
Target:  5'- cCaGGCAUGagaccaaGGAaguUGC-CUGCGCCg -3'
miRNA:   3'- aGcCCGUACg------CCUau-ACGuGACGCGG- -5'
12445 3' -56 NC_003324.1 + 25518 0.66 0.664041
Target:  5'- gUGGGUcgGCuGGGgcgGC-CUGCGCa -3'
miRNA:   3'- aGCCCGuaCG-CCUauaCGuGACGCGg -5'
12445 3' -56 NC_003324.1 + 26180 0.68 0.575382
Target:  5'- gUCGGcggucucGC-UGCGGGgcUGCGuCUGCGUCg -3'
miRNA:   3'- -AGCC-------CGuACGCCUauACGU-GACGCGG- -5'
12445 3' -56 NC_003324.1 + 26790 0.67 0.609209
Target:  5'- uUCGgcuuGGCAgacGCGGccGUGCGCUuggcuggcuuugGCGCCg -3'
miRNA:   3'- -AGC----CCGUa--CGCCuaUACGUGA------------CGCGG- -5'
12445 3' -56 NC_003324.1 + 26927 0.68 0.521856
Target:  5'- -aGGGCAUgGCGGcgAUcgacgagGCACUcagcggagcgGCGCCa -3'
miRNA:   3'- agCCCGUA-CGCCuaUA-------CGUGA----------CGCGG- -5'
12445 3' -56 NC_003324.1 + 27203 0.72 0.341171
Target:  5'- aCGGGCucaagaGCGaGAgcgaccgcgcugGUGUGCUGCGCCa -3'
miRNA:   3'- aGCCCGua----CGC-CUa-----------UACGUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.