miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 5' -53.7 NC_003324.1 + 1386 0.71 0.557837
Target:  5'- cCGuGACAUcgaUGCGCCGACggugCUGgGCGUUCu -3'
miRNA:   3'- -GC-UUGUA---ACGCGGCUG----GACgUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 2630 0.75 0.352941
Target:  5'- gGAACGgcGUGCCG-UCUGC-CGUCCg -3'
miRNA:   3'- gCUUGUaaCGCGGCuGGACGuGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 7814 0.66 0.802937
Target:  5'- uCGGACAUaggcaggccaUGCgGCCGugCUGaccuCGUUCg -3'
miRNA:   3'- -GCUUGUA----------ACG-CGGCugGACgu--GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 10278 0.66 0.83082
Target:  5'- -uGAUAUUgGCGCCGAUgaGCACuagCCg -3'
miRNA:   3'- gcUUGUAA-CGCGGCUGgaCGUGca-GG- -5'
12445 5' -53.7 NC_003324.1 + 11544 0.69 0.678322
Target:  5'- uGAccGCAaUGUGCC--CCUGCGCGuUCCa -3'
miRNA:   3'- gCU--UGUaACGCGGcuGGACGUGC-AGG- -5'
12445 5' -53.7 NC_003324.1 + 12708 0.69 0.645418
Target:  5'- aGAGCAgauaUGCGCCguuGAUCUGCcCG-CCg -3'
miRNA:   3'- gCUUGUa---ACGCGG---CUGGACGuGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 13094 0.72 0.484101
Target:  5'- gCGGGCGUUGaUGCCGcCCUGCAgauCG-CCa -3'
miRNA:   3'- -GCUUGUAAC-GCGGCuGGACGU---GCaGG- -5'
12445 5' -53.7 NC_003324.1 + 13329 0.67 0.793271
Target:  5'- -cGACGcUUGCgGCCaugauGACCUGCGCGaUCUg -3'
miRNA:   3'- gcUUGU-AACG-CGG-----CUGGACGUGC-AGG- -5'
12445 5' -53.7 NC_003324.1 + 13708 0.69 0.634412
Target:  5'- uCGGAUcg-GaUGCCGaucGCCUGCGCGUCUu -3'
miRNA:   3'- -GCUUGuaaC-GCGGC---UGGACGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 15115 0.69 0.667384
Target:  5'- -uGGCGUccUGCGCCaugaucGACCUGC-CGUCg -3'
miRNA:   3'- gcUUGUA--ACGCGG------CUGGACGuGCAGg -5'
12445 5' -53.7 NC_003324.1 + 16320 0.73 0.444107
Target:  5'- aGGGCccUGCGCUGGCCgcgucgGCACGgCCu -3'
miRNA:   3'- gCUUGuaACGCGGCUGGa-----CGUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 16340 0.71 0.54707
Target:  5'- gCGAcgGCGUUGcCGUCGAUC-GCGuCGUCCa -3'
miRNA:   3'- -GCU--UGUAAC-GCGGCUGGaCGU-GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 18898 0.67 0.74264
Target:  5'- gGAGacugGCGCCGACCUucGcCGCG-CCa -3'
miRNA:   3'- gCUUguaaCGCGGCUGGA--C-GUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 19116 0.66 0.843205
Target:  5'- -cGGCAUUGCGCUugucgaucccggucaGGCC--CGCGUCCu -3'
miRNA:   3'- gcUUGUAACGCGG---------------CUGGacGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 19490 0.7 0.583906
Target:  5'- gCGAuaGCGUcgGCGUCGGCgUGCuucuugccgcggaagGCGUCCa -3'
miRNA:   3'- -GCU--UGUAa-CGCGGCUGgACG---------------UGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 19881 0.7 0.568664
Target:  5'- aGAGCug-GCGCCaacACCUGUcguuCGUCCa -3'
miRNA:   3'- gCUUGuaaCGCGGc--UGGACGu---GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 20516 0.67 0.753035
Target:  5'- aGGGCGUgccCGCCGACC-GCaaGCGcCCa -3'
miRNA:   3'- gCUUGUAac-GCGGCUGGaCG--UGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 20600 0.66 0.83082
Target:  5'- uGGGCGcUUGCgGUCGGCggGCACGcCCu -3'
miRNA:   3'- gCUUGU-AACG-CGGCUGgaCGUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 20737 0.66 0.837065
Target:  5'- uCGAGCGcagGCGCCugcuucucgaugucGGCCaUGCGCuccuuGUCCa -3'
miRNA:   3'- -GCUUGUaa-CGCGG--------------CUGG-ACGUG-----CAGG- -5'
12445 5' -53.7 NC_003324.1 + 21093 0.67 0.773445
Target:  5'- gCGGcGCGUgcUGCGUCGGCUUcCACGUCg -3'
miRNA:   3'- -GCU-UGUA--ACGCGGCUGGAcGUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.