miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 5' -53.7 NC_003324.1 + 19116 0.66 0.843205
Target:  5'- -cGGCAUUGCGCUugucgaucccggucaGGCC--CGCGUCCu -3'
miRNA:   3'- gcUUGUAACGCGG---------------CUGGacGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 20516 0.67 0.753035
Target:  5'- aGGGCGUgccCGCCGACC-GCaaGCGcCCa -3'
miRNA:   3'- gCUUGUAac-GCGGCUGGaCG--UGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 21093 0.67 0.773445
Target:  5'- gCGGcGCGUgcUGCGUCGGCUUcCACGUCg -3'
miRNA:   3'- -GCU-UGUA--ACGCGGCUGGAcGUGCAGg -5'
12445 5' -53.7 NC_003324.1 + 55577 0.67 0.773445
Target:  5'- uCGAGCGaacGC-CCGACC-GCAUGUUCu -3'
miRNA:   3'- -GCUUGUaa-CGcGGCUGGaCGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 32287 0.66 0.821722
Target:  5'- aGAACAcgcugGCGacaaCGGCCucUGCGCGgcgCCg -3'
miRNA:   3'- gCUUGUaa---CGCg---GCUGG--ACGUGCa--GG- -5'
12445 5' -53.7 NC_003324.1 + 27531 0.66 0.821722
Target:  5'- gGAACAgagcGCGCgGACCUGUuucgggcuCGgcugCCg -3'
miRNA:   3'- gCUUGUaa--CGCGgCUGGACGu-------GCa---GG- -5'
12445 5' -53.7 NC_003324.1 + 28717 0.66 0.83082
Target:  5'- uGGGCAg-GCGCCGAaaCCUGCucugcaguucccGCG-CCg -3'
miRNA:   3'- gCUUGUaaCGCGGCU--GGACG------------UGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 31166 0.66 0.83082
Target:  5'- gGAGC--UGC-CCGGCCUGCGCcaUCa -3'
miRNA:   3'- gCUUGuaACGcGGCUGGACGUGcaGG- -5'
12445 5' -53.7 NC_003324.1 + 20737 0.66 0.837065
Target:  5'- uCGAGCGcagGCGCCugcuucucgaugucGGCCaUGCGCuccuuGUCCa -3'
miRNA:   3'- -GCUUGUaa-CGCGG--------------CUGG-ACGUG-----CAGG- -5'
12445 5' -53.7 NC_003324.1 + 28631 0.68 0.710829
Target:  5'- cCGGAuCGUUGCggGCCG-CCUugucGCGCGUCg -3'
miRNA:   3'- -GCUU-GUAACG--CGGCuGGA----CGUGCAGg -5'
12445 5' -53.7 NC_003324.1 + 22013 0.68 0.710829
Target:  5'- aCGAggcGCAUgucgaGCGCa-GCCUugcGCGCGUCCg -3'
miRNA:   3'- -GCU---UGUAa----CGCGgcUGGA---CGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 43787 0.68 0.700056
Target:  5'- uCGAGCAggGUGCCGggaacGCCggcaagGCGCGUg- -3'
miRNA:   3'- -GCUUGUaaCGCGGC-----UGGa-----CGUGCAgg -5'
12445 5' -53.7 NC_003324.1 + 54302 0.81 0.141641
Target:  5'- --uGCGUcUGCGCCG-UCUGCACGUCCg -3'
miRNA:   3'- gcuUGUA-ACGCGGCuGGACGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 16340 0.71 0.54707
Target:  5'- gCGAcgGCGUUGcCGUCGAUC-GCGuCGUCCa -3'
miRNA:   3'- -GCU--UGUAAC-GCGGCUGGaCGU-GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 1386 0.71 0.557837
Target:  5'- cCGuGACAUcgaUGCGCCGACggugCUGgGCGUUCu -3'
miRNA:   3'- -GC-UUGUA---ACGCGGCUG----GACgUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 23753 0.71 0.557837
Target:  5'- -cGACGUUGCGCCGGaaaucgggguCCgauucggcgGCGCGUUCg -3'
miRNA:   3'- gcUUGUAACGCGGCU----------GGa--------CGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 55504 0.7 0.579542
Target:  5'- cCGGGCAggaGCcuGCCGGCCUcGaCACGUUCa -3'
miRNA:   3'- -GCUUGUaa-CG--CGGCUGGA-C-GUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 19490 0.7 0.583906
Target:  5'- gCGAuaGCGUcgGCGUCGGCgUGCuucuugccgcggaagGCGUCCa -3'
miRNA:   3'- -GCU--UGUAa-CGCGGCUGgACG---------------UGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 42298 0.7 0.612404
Target:  5'- uGAG---UGCGCCG-CCUGCcACGUgCCg -3'
miRNA:   3'- gCUUguaACGCGGCuGGACG-UGCA-GG- -5'
12445 5' -53.7 NC_003324.1 + 23095 0.69 0.678322
Target:  5'- aCGAACAUcgGCuuGCgGGCCUGUccgauGCGUCg -3'
miRNA:   3'- -GCUUGUAa-CG--CGgCUGGACG-----UGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.