miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12447 5' -57 NC_003324.1 + 9730 0.66 0.599468
Target:  5'- -cGCCcaGCGCgUUGGCGUugccGGCGGUGUUGg -3'
miRNA:   3'- gaCGG--CGCG-AGUUGUA----CCGCCGCAAU- -5'
12447 5' -57 NC_003324.1 + 23539 0.66 0.599468
Target:  5'- gUGCC-C-CaCAGCGUGGCGGCGg-- -3'
miRNA:   3'- gACGGcGcGaGUUGUACCGCCGCaau -5'
12447 5' -57 NC_003324.1 + 28917 0.66 0.599468
Target:  5'- -aGCgCGUGCUCgAACA-GGCuGGCGUc- -3'
miRNA:   3'- gaCG-GCGCGAG-UUGUaCCG-CCGCAau -5'
12447 5' -57 NC_003324.1 + 21918 0.66 0.588509
Target:  5'- aUGCCGCGCUgGGCuucccacuucuuGUGGauGCGg-- -3'
miRNA:   3'- gACGGCGCGAgUUG------------UACCgcCGCaau -5'
12447 5' -57 NC_003324.1 + 24022 0.66 0.588509
Target:  5'- gCUGCgUGCGCUUggagAAgAUGGCGGCc--- -3'
miRNA:   3'- -GACG-GCGCGAG----UUgUACCGCCGcaau -5'
12447 5' -57 NC_003324.1 + 24404 0.66 0.588509
Target:  5'- -gGaCCGCGUUgcCGGCAUGGUGcGCGUc- -3'
miRNA:   3'- gaC-GGCGCGA--GUUGUACCGC-CGCAau -5'
12447 5' -57 NC_003324.1 + 41486 0.66 0.588509
Target:  5'- -aGCCacggGCGCUCGuCGUGGCGaGCa--- -3'
miRNA:   3'- gaCGG----CGCGAGUuGUACCGC-CGcaau -5'
12447 5' -57 NC_003324.1 + 30137 0.66 0.577587
Target:  5'- gUGUCGCGaccggCGGCGUgaugGGCGGCGg-- -3'
miRNA:   3'- gACGGCGCga---GUUGUA----CCGCCGCaau -5'
12447 5' -57 NC_003324.1 + 9649 0.66 0.577587
Target:  5'- -cGCCGgcaaCGC-CAACGcgcugGGCGGCGUg- -3'
miRNA:   3'- gaCGGC----GCGaGUUGUa----CCGCCGCAau -5'
12447 5' -57 NC_003324.1 + 29994 0.66 0.577587
Target:  5'- -gGCCGCGCcgucCAGCAUGGCcagcaGCGc-- -3'
miRNA:   3'- gaCGGCGCGa---GUUGUACCGc----CGCaau -5'
12447 5' -57 NC_003324.1 + 56674 0.67 0.554806
Target:  5'- gUGCCGcCGUcaauucgUCAGCGauaGCGGCGUUAu -3'
miRNA:   3'- gACGGC-GCG-------AGUUGUac-CGCCGCAAU- -5'
12447 5' -57 NC_003324.1 + 7650 0.67 0.523806
Target:  5'- -aGUCGCGC-CGGCAgugccGGCuGGCGUUu -3'
miRNA:   3'- gaCGGCGCGaGUUGUa----CCG-CCGCAAu -5'
12447 5' -57 NC_003324.1 + 14581 0.68 0.492461
Target:  5'- cCUGCCgGCGCaagCGGCc-GGCGGCGc-- -3'
miRNA:   3'- -GACGG-CGCGa--GUUGuaCCGCCGCaau -5'
12447 5' -57 NC_003324.1 + 4636 0.68 0.482204
Target:  5'- cCUGCgCGCGCUCGAUcacgGcGCGGCu--- -3'
miRNA:   3'- -GACG-GCGCGAGUUGua--C-CGCCGcaau -5'
12447 5' -57 NC_003324.1 + 13169 0.68 0.482204
Target:  5'- -gGCUGCGUcggCGGCGgucGGCGGCGg-- -3'
miRNA:   3'- gaCGGCGCGa--GUUGUa--CCGCCGCaau -5'
12447 5' -57 NC_003324.1 + 22093 0.68 0.482204
Target:  5'- -gGCUGCGCUCGACAUGcGCcuCGUc- -3'
miRNA:   3'- gaCGGCGCGAGUUGUAC-CGccGCAau -5'
12447 5' -57 NC_003324.1 + 12235 0.68 0.472051
Target:  5'- aUGCCGaauggUAugAUGGCGGCGUUc -3'
miRNA:   3'- gACGGCgcga-GUugUACCGCCGCAAu -5'
12447 5' -57 NC_003324.1 + 39989 0.68 0.452078
Target:  5'- -cGUCGCGCcgAGCGUGGCgagGGUGUUGg -3'
miRNA:   3'- gaCGGCGCGagUUGUACCG---CCGCAAU- -5'
12447 5' -57 NC_003324.1 + 54426 0.68 0.448139
Target:  5'- gCUGCCGgGcCUCGACugggucauagccGGCGGCGa-- -3'
miRNA:   3'- -GACGGCgC-GAGUUGua----------CCGCCGCaau -5'
12447 5' -57 NC_003324.1 + 44097 0.69 0.404265
Target:  5'- -cGCaGCGCUCGGCAUgaucccGGCGGCa--- -3'
miRNA:   3'- gaCGgCGCGAGUUGUA------CCGCCGcaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.