Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 30454 | 0.66 | 0.961194 |
Target: 5'- gGgCGGCAUGGCCgagggCGACGccAUCa- -3' miRNA: 3'- aCgGCCGUAUUGGaa---GCUGUa-UAGcu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 17561 | 0.66 | 0.961194 |
Target: 5'- gGuCCGGCAU-GCCgaugcgCGACGacagAUCGAc -3' miRNA: 3'- aC-GGCCGUAuUGGaa----GCUGUa---UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 9210 | 0.66 | 0.961194 |
Target: 5'- cUGCUGGCGUuACacgCGGCAUGcuUCGu -3' miRNA: 3'- -ACGGCCGUAuUGgaaGCUGUAU--AGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 23859 | 0.66 | 0.960006 |
Target: 5'- gGCCGGCGUcuuguagagcagcgGACCgagcuccUCGACG-AUCGc -3' miRNA: 3'- aCGGCCGUA--------------UUGGa------AGCUGUaUAGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 53584 | 0.66 | 0.957135 |
Target: 5'- aUGCCGGUccc-CCUuugCGACAUGacacUCGAc -3' miRNA: 3'- -ACGGCCGuauuGGAa--GCUGUAU----AGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 39341 | 0.66 | 0.957135 |
Target: 5'- cGCUGGCG-AGCCUUCGGaa---CGAu -3' miRNA: 3'- aCGGCCGUaUUGGAAGCUguauaGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 21017 | 0.66 | 0.957135 |
Target: 5'- gGCCGcGCcgAAauCCUUgGGCuUGUCGAa -3' miRNA: 3'- aCGGC-CGuaUU--GGAAgCUGuAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 12344 | 0.66 | 0.952794 |
Target: 5'- uUGUCGGCAUuGCCgcgcUCGGCAgcauucUCGu -3' miRNA: 3'- -ACGGCCGUAuUGGa---AGCUGUau----AGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 19098 | 0.66 | 0.947689 |
Target: 5'- cGCucgCGGCAUccUCUUCGGCAUugcgcuuGUCGAu -3' miRNA: 3'- aCG---GCCGUAuuGGAAGCUGUA-------UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 14812 | 0.66 | 0.94325 |
Target: 5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3' miRNA: 3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 34222 | 0.66 | 0.952794 |
Target: 5'- gUGCCGGUcccUGACCUgUC-ACcgGUCGAc -3' miRNA: 3'- -ACGGCCGu--AUUGGA-AGcUGuaUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 33752 | 0.66 | 0.94325 |
Target: 5'- uUGgCGGCAgcGCa---GGCGUAUCGAg -3' miRNA: 3'- -ACgGCCGUauUGgaagCUGUAUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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