miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 39341 0.66 0.957135
Target:  5'- cGCUGGCG-AGCCUUCGGaa---CGAu -3'
miRNA:   3'- aCGGCCGUaUUGGAAGCUguauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 41050 0.7 0.785678
Target:  5'- aGCCGGCgAUAGCCUUgcagcgcgucacCGugAUAgcggCGAu -3'
miRNA:   3'- aCGGCCG-UAUUGGAA------------GCugUAUa---GCU- -5'
12449 5' -49.6 NC_003324.1 + 44092 0.67 0.938038
Target:  5'- cGCuCGGCAUGAUCccggCGGCAgc-CGAg -3'
miRNA:   3'- aCG-GCCGUAUUGGaa--GCUGUauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 45133 0.67 0.926126
Target:  5'- cUGCCGGCGUAucaacaacgauguGCCUggCG-CGU-UCGAa -3'
miRNA:   3'- -ACGGCCGUAU-------------UGGAa-GCuGUAuAGCU- -5'
12449 5' -49.6 NC_003324.1 + 46126 0.69 0.843747
Target:  5'- -cUCGGCAagUGGCCUUCGACG-AUCa- -3'
miRNA:   3'- acGGCCGU--AUUGGAAGCUGUaUAGcu -5'
12449 5' -49.6 NC_003324.1 + 48690 0.67 0.920617
Target:  5'- aUGCgGGCGccGACCU---GCGUGUCGAu -3'
miRNA:   3'- -ACGgCCGUa-UUGGAagcUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 50217 0.8 0.292582
Target:  5'- aGCCuugaaGGCGUGACCUugaUCGACAUgAUCGAg -3'
miRNA:   3'- aCGG-----CCGUAUUGGA---AGCUGUA-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 50322 0.69 0.861295
Target:  5'- cGCgGGCuuucGCC-UCGAuCAUGUCGAu -3'
miRNA:   3'- aCGgCCGuau-UGGaAGCU-GUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 53567 0.69 0.843747
Target:  5'- cGCCGGCAUucGGCCU-CGGCuuccgcgCGGg -3'
miRNA:   3'- aCGGCCGUA--UUGGAaGCUGuaua---GCU- -5'
12449 5' -49.6 NC_003324.1 + 53584 0.66 0.957135
Target:  5'- aUGCCGGUccc-CCUuugCGACAUGacacUCGAc -3'
miRNA:   3'- -ACGGCCGuauuGGAa--GCUGUAU----AGCU- -5'
12449 5' -49.6 NC_003324.1 + 55212 0.66 0.961194
Target:  5'- uUGCCGGCAa---CUUCGACGa----- -3'
miRNA:   3'- -ACGGCCGUauugGAAGCUGUauagcu -5'
12449 5' -49.6 NC_003324.1 + 55580 0.69 0.852646
Target:  5'- gGCCGGCAggcuCCUgccCGGCGUGgaaGAa -3'
miRNA:   3'- aCGGCCGUauu-GGAa--GCUGUAUag-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.