Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 16302 | 0.68 | 0.907513 |
Target: 5'- cGUCGGCAcGGCCUgccccgUCGcgGUAUCGAc -3' miRNA: 3'- aCGGCCGUaUUGGA------AGCugUAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 14812 | 0.66 | 0.94325 |
Target: 5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3' miRNA: 3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 14646 | 0.69 | 0.843747 |
Target: 5'- cGCCGGCA-GGCCg-CGACccAUGUUGAc -3' miRNA: 3'- aCGGCCGUaUUGGaaGCUG--UAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 14515 | 0.71 | 0.732448 |
Target: 5'- cGCCGGCAUGggcccagaGCCgggCGugAUccccAUCGAg -3' miRNA: 3'- aCGGCCGUAU--------UGGaa-GCugUA----UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 14451 | 0.68 | 0.906826 |
Target: 5'- aUGCCGGCGUccaagcaucggcgGACCUUgcUGGCAccGUCGc -3' miRNA: 3'- -ACGGCCGUA-------------UUGGAA--GCUGUa-UAGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 12344 | 0.66 | 0.952794 |
Target: 5'- uUGUCGGCAUuGCCgcgcUCGGCAgcauucUCGu -3' miRNA: 3'- -ACGGCCGUAuUGGa---AGCUGUau----AGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 9210 | 0.66 | 0.961194 |
Target: 5'- cUGCUGGCGUuACacgCGGCAUGcuUCGu -3' miRNA: 3'- -ACGGCCGUAuUGgaaGCUGUAU--AGCu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 7727 | 0.71 | 0.775326 |
Target: 5'- aGCCGGCAcuGCCggcgCGACuccgCGAa -3' miRNA: 3'- aCGGCCGUauUGGaa--GCUGuauaGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 6353 | 0.67 | 0.938038 |
Target: 5'- aGCC-GCAUGaucucgcucGCCUUgGGCAUGUCu- -3' miRNA: 3'- aCGGcCGUAU---------UGGAAgCUGUAUAGcu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 4849 | 0.72 | 0.676501 |
Target: 5'- cGCCGGCAacAACgUUgCGGCcgGUCGAg -3' miRNA: 3'- aCGGCCGUa-UUGgAA-GCUGuaUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 2504 | 0.68 | 0.907513 |
Target: 5'- cGCCGGCGUcggcGGCUUcaucaUCGGCGUuggCGGu -3' miRNA: 3'- aCGGCCGUA----UUGGA-----AGCUGUAua-GCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 2241 | 0.67 | 0.914213 |
Target: 5'- cUGUCGGCAUAuCCUUCGuaaugAUCa- -3' miRNA: 3'- -ACGGCCGUAUuGGAAGCugua-UAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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