miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 29214 0.67 0.93253
Target:  5'- uUGgCGGCAcguCUcaggUCGAUAUGUCGAa -3'
miRNA:   3'- -ACgGCCGUauuGGa---AGCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 29179 0.7 0.78465
Target:  5'- aUGCCGGCAgagcgcaagcgucUGGCUgacgagUUCGGCGUGUCc- -3'
miRNA:   3'- -ACGGCCGU-------------AUUGG------AAGCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 29113 1.1 0.003684
Target:  5'- cUGCCGGCAUAACCUUCGACAUAUCGAc -3'
miRNA:   3'- -ACGGCCGUAUUGGAAGCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 26114 0.67 0.926723
Target:  5'- cGCCGGCA-GACCggUGACGccAUUGGc -3'
miRNA:   3'- aCGGCCGUaUUGGaaGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 25963 0.76 0.485787
Target:  5'- uUGCUGGCGUugguGCCUUCGGCGccccagaccagAUCGAu -3'
miRNA:   3'- -ACGGCCGUAu---UGGAAGCUGUa----------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 24396 0.69 0.862146
Target:  5'- uUGCCGGCAUGgugcgcguccgcgacGCCUUCGccaagcuccgccguGCccagAUCGAc -3'
miRNA:   3'- -ACGGCCGUAU---------------UGGAAGC--------------UGua--UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 24330 0.84 0.174438
Target:  5'- aUGCCGGCAacgcgguCCUUCGACGUGUCa- -3'
miRNA:   3'- -ACGGCCGUauu----GGAAGCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 23859 0.66 0.960006
Target:  5'- gGCCGGCGUcuuguagagcagcgGACCgagcuccUCGACG-AUCGc -3'
miRNA:   3'- aCGGCCGUA--------------UUGGa------AGCUGUaUAGCu -5'
12449 5' -49.6 NC_003324.1 + 23790 0.67 0.926723
Target:  5'- aGCCGGCGgacAUCgaggcagUCGACA--UCGAu -3'
miRNA:   3'- aCGGCCGUau-UGGa------AGCUGUauAGCU- -5'
12449 5' -49.6 NC_003324.1 + 22806 0.79 0.335974
Target:  5'- cGCCGGCAaaaaggacgaugggcUGACCUUCGACGagcUCGGc -3'
miRNA:   3'- aCGGCCGU---------------AUUGGAAGCUGUau-AGCU- -5'
12449 5' -49.6 NC_003324.1 + 21984 0.73 0.652574
Target:  5'- aGCCGGCAUAgucgccauaGCCcgcaUCGACGaggcgcaUGUCGAg -3'
miRNA:   3'- aCGGCCGUAU---------UGGa---AGCUGU-------AUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21983 0.68 0.899803
Target:  5'- aGCgCGGCAUccAGCUUguauucaUCGACcUGUCGAc -3'
miRNA:   3'- aCG-GCCGUA--UUGGA-------AGCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21868 0.68 0.900518
Target:  5'- cGgCGGCcuUGGCCUucuucggggUCGACAgGUCGAu -3'
miRNA:   3'- aCgGCCGu-AUUGGA---------AGCUGUaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21298 0.68 0.907513
Target:  5'- cGCCGuC---GCCUUCGGCAgcUCGAa -3'
miRNA:   3'- aCGGCcGuauUGGAAGCUGUauAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21129 0.71 0.743363
Target:  5'- uUGCCGGUGUggugaagggagaGACCUUCGACAa----- -3'
miRNA:   3'- -ACGGCCGUA------------UUGGAAGCUGUauagcu -5'
12449 5' -49.6 NC_003324.1 + 21017 0.66 0.957135
Target:  5'- gGCCGcGCcgAAauCCUUgGGCuUGUCGAa -3'
miRNA:   3'- aCGGC-CGuaUU--GGAAgCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 20448 0.77 0.444181
Target:  5'- gGCCGGCgAUAGCaagagcacCGGCAUGUCGAa -3'
miRNA:   3'- aCGGCCG-UAUUGgaa-----GCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 19098 0.66 0.947689
Target:  5'- cGCucgCGGCAUccUCUUCGGCAUugcgcuuGUCGAu -3'
miRNA:   3'- aCG---GCCGUAuuGGAAGCUGUA-------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 17783 0.66 0.952794
Target:  5'- cGCCaGCcUGAUCUUCGGCgAUGaCGAc -3'
miRNA:   3'- aCGGcCGuAUUGGAAGCUG-UAUaGCU- -5'
12449 5' -49.6 NC_003324.1 + 17561 0.66 0.961194
Target:  5'- gGuCCGGCAU-GCCgaugcgCGACGacagAUCGAc -3'
miRNA:   3'- aC-GGCCGUAuUGGaa----GCUGUa---UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.