Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 14451 | 0.68 | 0.906826 |
Target: 5'- aUGCCGGCGUccaagcaucggcgGACCUUgcUGGCAccGUCGc -3' miRNA: 3'- -ACGGCCGUA-------------UUGGAA--GCUGUa-UAGCu -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 21983 | 0.68 | 0.899803 |
Target: 5'- aGCgCGGCAUccAGCUUguauucaUCGACcUGUCGAc -3' miRNA: 3'- aCG-GCCGUA--UUGGA-------AGCUGuAUAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 39053 | 0.68 | 0.893233 |
Target: 5'- cGCagGGCAUGAUCUucaucgaaUCGACGgccaaggGUCGAg -3' miRNA: 3'- aCGg-CCGUAUUGGA--------AGCUGUa------UAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 30142 | 0.68 | 0.877811 |
Target: 5'- gGCCGGUGUcgcGACCggCGGCGUGaUGGg -3' miRNA: 3'- aCGGCCGUA---UUGGaaGCUGUAUaGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 24396 | 0.69 | 0.862146 |
Target: 5'- uUGCCGGCAUGgugcgcguccgcgacGCCUUCGccaagcuccgccguGCccagAUCGAc -3' miRNA: 3'- -ACGGCCGUAU---------------UGGAAGC--------------UGua--UAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 50322 | 0.69 | 0.861295 |
Target: 5'- cGCgGGCuuucGCC-UCGAuCAUGUCGAu -3' miRNA: 3'- aCGgCCGuau-UGGaAGCU-GUAUAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 55580 | 0.69 | 0.852646 |
Target: 5'- gGCCGGCAggcuCCUgccCGGCGUGgaaGAa -3' miRNA: 3'- aCGGCCGUauu-GGAa--GCUGUAUag-CU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 53567 | 0.69 | 0.843747 |
Target: 5'- cGCCGGCAUucGGCCU-CGGCuuccgcgCGGg -3' miRNA: 3'- aCGGCCGUA--UUGGAaGCUGuaua---GCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 14646 | 0.69 | 0.843747 |
Target: 5'- cGCCGGCA-GGCCg-CGACccAUGUUGAc -3' miRNA: 3'- aCGGCCGUaUUGGaaGCUG--UAUAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 46126 | 0.69 | 0.843747 |
Target: 5'- -cUCGGCAagUGGCCUUCGACG-AUCa- -3' miRNA: 3'- acGGCCGU--AUUGGAAGCUGUaUAGcu -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 29179 | 0.7 | 0.78465 |
Target: 5'- aUGCCGGCAgagcgcaagcgucUGGCUgacgagUUCGGCGUGUCc- -3' miRNA: 3'- -ACGGCCGU-------------AUUGG------AAGCUGUAUAGcu -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 7727 | 0.71 | 0.775326 |
Target: 5'- aGCCGGCAcuGCCggcgCGACuccgCGAa -3' miRNA: 3'- aCGGCCGUauUGGaa--GCUGuauaGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 21129 | 0.71 | 0.743363 |
Target: 5'- uUGCCGGUGUggugaagggagaGACCUUCGACAa----- -3' miRNA: 3'- -ACGGCCGUA------------UUGGAAGCUGUauagcu -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 14515 | 0.71 | 0.732448 |
Target: 5'- cGCCGGCAUGggcccagaGCCgggCGugAUccccAUCGAg -3' miRNA: 3'- aCGGCCGUAU--------UGGaa-GCugUA----UAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 20448 | 0.77 | 0.444181 |
Target: 5'- gGCCGGCgAUAGCaagagcacCGGCAUGUCGAa -3' miRNA: 3'- aCGGCCG-UAUUGgaa-----GCUGUAUAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 22806 | 0.79 | 0.335974 |
Target: 5'- cGCCGGCAaaaaggacgaugggcUGACCUUCGACGagcUCGGc -3' miRNA: 3'- aCGGCCGU---------------AUUGGAAGCUGUau-AGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 21298 | 0.68 | 0.907513 |
Target: 5'- cGCCGuC---GCCUUCGGCAgcUCGAa -3' miRNA: 3'- aCGGCcGuauUGGAAGCUGUauAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 16302 | 0.68 | 0.907513 |
Target: 5'- cGUCGGCAcGGCCUgccccgUCGcgGUAUCGAc -3' miRNA: 3'- aCGGCCGUaUUGGA------AGCugUAUAGCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 2504 | 0.68 | 0.907513 |
Target: 5'- cGCCGGCGUcggcGGCUUcaucaUCGGCGUuggCGGu -3' miRNA: 3'- aCGGCCGUA----UUGGA-----AGCUGUAua-GCU- -5' |
|||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 2241 | 0.67 | 0.914213 |
Target: 5'- cUGUCGGCAUAuCCUUCGuaaugAUCa- -3' miRNA: 3'- -ACGGCCGUAUuGGAAGCugua-UAGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home