miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 17561 0.66 0.961194
Target:  5'- gGuCCGGCAU-GCCgaugcgCGACGacagAUCGAc -3'
miRNA:   3'- aC-GGCCGUAuUGGaa----GCUGUa---UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14812 0.66 0.94325
Target:  5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3'
miRNA:   3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 19098 0.66 0.947689
Target:  5'- cGCucgCGGCAUccUCUUCGGCAUugcgcuuGUCGAu -3'
miRNA:   3'- aCG---GCCGUAuuGGAAGCUGUA-------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 12344 0.66 0.952794
Target:  5'- uUGUCGGCAUuGCCgcgcUCGGCAgcauucUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGGa---AGCUGUau----AGCu -5'
12449 5' -49.6 NC_003324.1 + 21017 0.66 0.957135
Target:  5'- gGCCGcGCcgAAauCCUUgGGCuUGUCGAa -3'
miRNA:   3'- aCGGC-CGuaUU--GGAAgCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 39341 0.66 0.957135
Target:  5'- cGCUGGCG-AGCCUUCGGaa---CGAu -3'
miRNA:   3'- aCGGCCGUaUUGGAAGCUguauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 53584 0.66 0.957135
Target:  5'- aUGCCGGUccc-CCUuugCGACAUGacacUCGAc -3'
miRNA:   3'- -ACGGCCGuauuGGAa--GCUGUAU----AGCU- -5'
12449 5' -49.6 NC_003324.1 + 23859 0.66 0.960006
Target:  5'- gGCCGGCGUcuuguagagcagcgGACCgagcuccUCGACG-AUCGc -3'
miRNA:   3'- aCGGCCGUA--------------UUGGa------AGCUGUaUAGCu -5'
12449 5' -49.6 NC_003324.1 + 9210 0.66 0.961194
Target:  5'- cUGCUGGCGUuACacgCGGCAUGcuUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGgaaGCUGUAU--AGCu -5'
12449 5' -49.6 NC_003324.1 + 45133 0.67 0.926126
Target:  5'- cUGCCGGCGUAucaacaacgauguGCCUggCG-CGU-UCGAa -3'
miRNA:   3'- -ACGGCCGUAU-------------UGGAa-GCuGUAuAGCU- -5'
12449 5' -49.6 NC_003324.1 + 31780 0.67 0.920617
Target:  5'- cUGCCGGCcucuucgGGCCcguaUUCGGCAacGUCGGc -3'
miRNA:   3'- -ACGGCCGua-----UUGG----AAGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14451 0.68 0.906826
Target:  5'- aUGCCGGCGUccaagcaucggcgGACCUUgcUGGCAccGUCGc -3'
miRNA:   3'- -ACGGCCGUA-------------UUGGAA--GCUGUa-UAGCu -5'
12449 5' -49.6 NC_003324.1 + 24330 0.84 0.174438
Target:  5'- aUGCCGGCAacgcgguCCUUCGACGUGUCa- -3'
miRNA:   3'- -ACGGCCGUauu----GGAAGCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 50217 0.8 0.292582
Target:  5'- aGCCuugaaGGCGUGACCUugaUCGACAUgAUCGAg -3'
miRNA:   3'- aCGG-----CCGUAUUGGA---AGCUGUA-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 25963 0.76 0.485787
Target:  5'- uUGCUGGCGUugguGCCUUCGGCGccccagaccagAUCGAu -3'
miRNA:   3'- -ACGGCCGUAu---UGGAAGCUGUa----------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 32482 0.75 0.562595
Target:  5'- cGCCGGCA--GCCUcggCGAUcacgGUGUCGAc -3'
miRNA:   3'- aCGGCCGUauUGGAa--GCUG----UAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21984 0.73 0.652574
Target:  5'- aGCCGGCAUAgucgccauaGCCcgcaUCGACGaggcgcaUGUCGAg -3'
miRNA:   3'- aCGGCCGUAU---------UGGa---AGCUGU-------AUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 4849 0.72 0.676501
Target:  5'- cGCCGGCAacAACgUUgCGGCcgGUCGAg -3'
miRNA:   3'- aCGGCCGUa-UUGgAA-GCUGuaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 41050 0.7 0.785678
Target:  5'- aGCCGGCgAUAGCCUUgcagcgcgucacCGugAUAgcggCGAu -3'
miRNA:   3'- aCGGCCG-UAUUGGAA------------GCugUAUa---GCU- -5'
12449 5' -49.6 NC_003324.1 + 21868 0.68 0.900518
Target:  5'- cGgCGGCcuUGGCCUucuucggggUCGACAgGUCGAu -3'
miRNA:   3'- aCgGCCGu-AUUGGA---------AGCUGUaUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.