miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 2241 0.67 0.914213
Target:  5'- cUGUCGGCAUAuCCUUCGuaaugAUCa- -3'
miRNA:   3'- -ACGGCCGUAUuGGAAGCugua-UAGcu -5'
12449 5' -49.6 NC_003324.1 + 2504 0.68 0.907513
Target:  5'- cGCCGGCGUcggcGGCUUcaucaUCGGCGUuggCGGu -3'
miRNA:   3'- aCGGCCGUA----UUGGA-----AGCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 4849 0.72 0.676501
Target:  5'- cGCCGGCAacAACgUUgCGGCcgGUCGAg -3'
miRNA:   3'- aCGGCCGUa-UUGgAA-GCUGuaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 6353 0.67 0.938038
Target:  5'- aGCC-GCAUGaucucgcucGCCUUgGGCAUGUCu- -3'
miRNA:   3'- aCGGcCGUAU---------UGGAAgCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 7727 0.71 0.775326
Target:  5'- aGCCGGCAcuGCCggcgCGACuccgCGAa -3'
miRNA:   3'- aCGGCCGUauUGGaa--GCUGuauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 9210 0.66 0.961194
Target:  5'- cUGCUGGCGUuACacgCGGCAUGcuUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGgaaGCUGUAU--AGCu -5'
12449 5' -49.6 NC_003324.1 + 12344 0.66 0.952794
Target:  5'- uUGUCGGCAUuGCCgcgcUCGGCAgcauucUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGGa---AGCUGUau----AGCu -5'
12449 5' -49.6 NC_003324.1 + 14451 0.68 0.906826
Target:  5'- aUGCCGGCGUccaagcaucggcgGACCUUgcUGGCAccGUCGc -3'
miRNA:   3'- -ACGGCCGUA-------------UUGGAA--GCUGUa-UAGCu -5'
12449 5' -49.6 NC_003324.1 + 14515 0.71 0.732448
Target:  5'- cGCCGGCAUGggcccagaGCCgggCGugAUccccAUCGAg -3'
miRNA:   3'- aCGGCCGUAU--------UGGaa-GCugUA----UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14646 0.69 0.843747
Target:  5'- cGCCGGCA-GGCCg-CGACccAUGUUGAc -3'
miRNA:   3'- aCGGCCGUaUUGGaaGCUG--UAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14812 0.66 0.94325
Target:  5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3'
miRNA:   3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 16302 0.68 0.907513
Target:  5'- cGUCGGCAcGGCCUgccccgUCGcgGUAUCGAc -3'
miRNA:   3'- aCGGCCGUaUUGGA------AGCugUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 17561 0.66 0.961194
Target:  5'- gGuCCGGCAU-GCCgaugcgCGACGacagAUCGAc -3'
miRNA:   3'- aC-GGCCGUAuUGGaa----GCUGUa---UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 17783 0.66 0.952794
Target:  5'- cGCCaGCcUGAUCUUCGGCgAUGaCGAc -3'
miRNA:   3'- aCGGcCGuAUUGGAAGCUG-UAUaGCU- -5'
12449 5' -49.6 NC_003324.1 + 19098 0.66 0.947689
Target:  5'- cGCucgCGGCAUccUCUUCGGCAUugcgcuuGUCGAu -3'
miRNA:   3'- aCG---GCCGUAuuGGAAGCUGUA-------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 20448 0.77 0.444181
Target:  5'- gGCCGGCgAUAGCaagagcacCGGCAUGUCGAa -3'
miRNA:   3'- aCGGCCG-UAUUGgaa-----GCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21017 0.66 0.957135
Target:  5'- gGCCGcGCcgAAauCCUUgGGCuUGUCGAa -3'
miRNA:   3'- aCGGC-CGuaUU--GGAAgCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21129 0.71 0.743363
Target:  5'- uUGCCGGUGUggugaagggagaGACCUUCGACAa----- -3'
miRNA:   3'- -ACGGCCGUA------------UUGGAAGCUGUauagcu -5'
12449 5' -49.6 NC_003324.1 + 21298 0.68 0.907513
Target:  5'- cGCCGuC---GCCUUCGGCAgcUCGAa -3'
miRNA:   3'- aCGGCcGuauUGGAAGCUGUauAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21868 0.68 0.900518
Target:  5'- cGgCGGCcuUGGCCUucuucggggUCGACAgGUCGAu -3'
miRNA:   3'- aCgGCCGu-AUUGGA---------AGCUGUaUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.