Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12449 | 5' | -49.6 | NC_003324.1 | + | 55580 | 0.69 | 0.852646 |
Target: 5'- gGCCGGCAggcuCCUgccCGGCGUGgaaGAa -3' miRNA: 3'- aCGGCCGUauu-GGAa--GCUGUAUag-CU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 55212 | 0.66 | 0.961194 |
Target: 5'- uUGCCGGCAa---CUUCGACGa----- -3' miRNA: 3'- -ACGGCCGUauugGAAGCUGUauagcu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 53584 | 0.66 | 0.957135 |
Target: 5'- aUGCCGGUccc-CCUuugCGACAUGacacUCGAc -3' miRNA: 3'- -ACGGCCGuauuGGAa--GCUGUAU----AGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 53567 | 0.69 | 0.843747 |
Target: 5'- cGCCGGCAUucGGCCU-CGGCuuccgcgCGGg -3' miRNA: 3'- aCGGCCGUA--UUGGAaGCUGuaua---GCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 50322 | 0.69 | 0.861295 |
Target: 5'- cGCgGGCuuucGCC-UCGAuCAUGUCGAu -3' miRNA: 3'- aCGgCCGuau-UGGaAGCU-GUAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 50217 | 0.8 | 0.292582 |
Target: 5'- aGCCuugaaGGCGUGACCUugaUCGACAUgAUCGAg -3' miRNA: 3'- aCGG-----CCGUAUUGGA---AGCUGUA-UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 48690 | 0.67 | 0.920617 |
Target: 5'- aUGCgGGCGccGACCU---GCGUGUCGAu -3' miRNA: 3'- -ACGgCCGUa-UUGGAagcUGUAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 46126 | 0.69 | 0.843747 |
Target: 5'- -cUCGGCAagUGGCCUUCGACG-AUCa- -3' miRNA: 3'- acGGCCGU--AUUGGAAGCUGUaUAGcu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 45133 | 0.67 | 0.926126 |
Target: 5'- cUGCCGGCGUAucaacaacgauguGCCUggCG-CGU-UCGAa -3' miRNA: 3'- -ACGGCCGUAU-------------UGGAa-GCuGUAuAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 44092 | 0.67 | 0.938038 |
Target: 5'- cGCuCGGCAUGAUCccggCGGCAgc-CGAg -3' miRNA: 3'- aCG-GCCGUAUUGGaa--GCUGUauaGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 41050 | 0.7 | 0.785678 |
Target: 5'- aGCCGGCgAUAGCCUUgcagcgcgucacCGugAUAgcggCGAu -3' miRNA: 3'- aCGGCCG-UAUUGGAA------------GCugUAUa---GCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 39341 | 0.66 | 0.957135 |
Target: 5'- cGCUGGCG-AGCCUUCGGaa---CGAu -3' miRNA: 3'- aCGGCCGUaUUGGAAGCUguauaGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 39053 | 0.68 | 0.893233 |
Target: 5'- cGCagGGCAUGAUCUucaucgaaUCGACGgccaaggGUCGAg -3' miRNA: 3'- aCGg-CCGUAUUGGA--------AGCUGUa------UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 35389 | 0.67 | 0.938038 |
Target: 5'- aGCCGGCGcAAuCCgcCGGCGcgAUCGGa -3' miRNA: 3'- aCGGCCGUaUU-GGaaGCUGUa-UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 34222 | 0.66 | 0.952794 |
Target: 5'- gUGCCGGUcccUGACCUgUC-ACcgGUCGAc -3' miRNA: 3'- -ACGGCCGu--AUUGGA-AGcUGuaUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 33752 | 0.66 | 0.94325 |
Target: 5'- uUGgCGGCAgcGCa---GGCGUAUCGAg -3' miRNA: 3'- -ACgGCCGUauUGgaagCUGUAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 32482 | 0.75 | 0.562595 |
Target: 5'- cGCCGGCA--GCCUcggCGAUcacgGUGUCGAc -3' miRNA: 3'- aCGGCCGUauUGGAa--GCUG----UAUAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 31780 | 0.67 | 0.920617 |
Target: 5'- cUGCCGGCcucuucgGGCCcguaUUCGGCAacGUCGGc -3' miRNA: 3'- -ACGGCCGua-----UUGG----AAGCUGUa-UAGCU- -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 30454 | 0.66 | 0.961194 |
Target: 5'- gGgCGGCAUGGCCgagggCGACGccAUCa- -3' miRNA: 3'- aCgGCCGUAUUGGaa---GCUGUa-UAGcu -5' |
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12449 | 5' | -49.6 | NC_003324.1 | + | 30142 | 0.68 | 0.877811 |
Target: 5'- gGCCGGUGUcgcGACCggCGGCGUGaUGGg -3' miRNA: 3'- aCGGCCGUA---UUGGaaGCUGUAUaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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