miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 29113 1.1 0.003684
Target:  5'- cUGCCGGCAUAACCUUCGACAUAUCGAc -3'
miRNA:   3'- -ACGGCCGUAUUGGAAGCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 24330 0.84 0.174438
Target:  5'- aUGCCGGCAacgcgguCCUUCGACGUGUCa- -3'
miRNA:   3'- -ACGGCCGUauu----GGAAGCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 50217 0.8 0.292582
Target:  5'- aGCCuugaaGGCGUGACCUugaUCGACAUgAUCGAg -3'
miRNA:   3'- aCGG-----CCGUAUUGGA---AGCUGUA-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 22806 0.79 0.335974
Target:  5'- cGCCGGCAaaaaggacgaugggcUGACCUUCGACGagcUCGGc -3'
miRNA:   3'- aCGGCCGU---------------AUUGGAAGCUGUau-AGCU- -5'
12449 5' -49.6 NC_003324.1 + 20448 0.77 0.444181
Target:  5'- gGCCGGCgAUAGCaagagcacCGGCAUGUCGAa -3'
miRNA:   3'- aCGGCCG-UAUUGgaa-----GCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 25963 0.76 0.485787
Target:  5'- uUGCUGGCGUugguGCCUUCGGCGccccagaccagAUCGAu -3'
miRNA:   3'- -ACGGCCGUAu---UGGAAGCUGUa----------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 32482 0.75 0.562595
Target:  5'- cGCCGGCA--GCCUcggCGAUcacgGUGUCGAc -3'
miRNA:   3'- aCGGCCGUauUGGAa--GCUG----UAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21984 0.73 0.652574
Target:  5'- aGCCGGCAUAgucgccauaGCCcgcaUCGACGaggcgcaUGUCGAg -3'
miRNA:   3'- aCGGCCGUAU---------UGGa---AGCUGU-------AUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 4849 0.72 0.676501
Target:  5'- cGCCGGCAacAACgUUgCGGCcgGUCGAg -3'
miRNA:   3'- aCGGCCGUa-UUGgAA-GCUGuaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14515 0.71 0.732448
Target:  5'- cGCCGGCAUGggcccagaGCCgggCGugAUccccAUCGAg -3'
miRNA:   3'- aCGGCCGUAU--------UGGaa-GCugUA----UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21129 0.71 0.743363
Target:  5'- uUGCCGGUGUggugaagggagaGACCUUCGACAa----- -3'
miRNA:   3'- -ACGGCCGUA------------UUGGAAGCUGUauagcu -5'
12449 5' -49.6 NC_003324.1 + 7727 0.71 0.775326
Target:  5'- aGCCGGCAcuGCCggcgCGACuccgCGAa -3'
miRNA:   3'- aCGGCCGUauUGGaa--GCUGuauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 29179 0.7 0.78465
Target:  5'- aUGCCGGCAgagcgcaagcgucUGGCUgacgagUUCGGCGUGUCc- -3'
miRNA:   3'- -ACGGCCGU-------------AUUGG------AAGCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 41050 0.7 0.785678
Target:  5'- aGCCGGCgAUAGCCUUgcagcgcgucacCGugAUAgcggCGAu -3'
miRNA:   3'- aCGGCCG-UAUUGGAA------------GCugUAUa---GCU- -5'
12449 5' -49.6 NC_003324.1 + 14646 0.69 0.843747
Target:  5'- cGCCGGCA-GGCCg-CGACccAUGUUGAc -3'
miRNA:   3'- aCGGCCGUaUUGGaaGCUG--UAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 46126 0.69 0.843747
Target:  5'- -cUCGGCAagUGGCCUUCGACG-AUCa- -3'
miRNA:   3'- acGGCCGU--AUUGGAAGCUGUaUAGcu -5'
12449 5' -49.6 NC_003324.1 + 53567 0.69 0.843747
Target:  5'- cGCCGGCAUucGGCCU-CGGCuuccgcgCGGg -3'
miRNA:   3'- aCGGCCGUA--UUGGAaGCUGuaua---GCU- -5'
12449 5' -49.6 NC_003324.1 + 55580 0.69 0.852646
Target:  5'- gGCCGGCAggcuCCUgccCGGCGUGgaaGAa -3'
miRNA:   3'- aCGGCCGUauu-GGAa--GCUGUAUag-CU- -5'
12449 5' -49.6 NC_003324.1 + 50322 0.69 0.861295
Target:  5'- cGCgGGCuuucGCC-UCGAuCAUGUCGAu -3'
miRNA:   3'- aCGgCCGuau-UGGaAGCU-GUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 24396 0.69 0.862146
Target:  5'- uUGCCGGCAUGgugcgcguccgcgacGCCUUCGccaagcuccgccguGCccagAUCGAc -3'
miRNA:   3'- -ACGGCCGUAU---------------UGGAAGC--------------UGua--UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.