miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 55212 0.66 0.961194
Target:  5'- uUGCCGGCAa---CUUCGACGa----- -3'
miRNA:   3'- -ACGGCCGUauugGAAGCUGUauagcu -5'
12449 5' -49.6 NC_003324.1 + 17561 0.66 0.961194
Target:  5'- gGuCCGGCAU-GCCgaugcgCGACGacagAUCGAc -3'
miRNA:   3'- aC-GGCCGUAuUGGaa----GCUGUa---UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 9210 0.66 0.961194
Target:  5'- cUGCUGGCGUuACacgCGGCAUGcuUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGgaaGCUGUAU--AGCu -5'
12449 5' -49.6 NC_003324.1 + 30454 0.66 0.961194
Target:  5'- gGgCGGCAUGGCCgagggCGACGccAUCa- -3'
miRNA:   3'- aCgGCCGUAUUGGaa---GCUGUa-UAGcu -5'
12449 5' -49.6 NC_003324.1 + 23859 0.66 0.960006
Target:  5'- gGCCGGCGUcuuguagagcagcgGACCgagcuccUCGACG-AUCGc -3'
miRNA:   3'- aCGGCCGUA--------------UUGGa------AGCUGUaUAGCu -5'
12449 5' -49.6 NC_003324.1 + 53584 0.66 0.957135
Target:  5'- aUGCCGGUccc-CCUuugCGACAUGacacUCGAc -3'
miRNA:   3'- -ACGGCCGuauuGGAa--GCUGUAU----AGCU- -5'
12449 5' -49.6 NC_003324.1 + 39341 0.66 0.957135
Target:  5'- cGCUGGCG-AGCCUUCGGaa---CGAu -3'
miRNA:   3'- aCGGCCGUaUUGGAAGCUguauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 21017 0.66 0.957135
Target:  5'- gGCCGcGCcgAAauCCUUgGGCuUGUCGAa -3'
miRNA:   3'- aCGGC-CGuaUU--GGAAgCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 17783 0.66 0.952794
Target:  5'- cGCCaGCcUGAUCUUCGGCgAUGaCGAc -3'
miRNA:   3'- aCGGcCGuAUUGGAAGCUG-UAUaGCU- -5'
12449 5' -49.6 NC_003324.1 + 12344 0.66 0.952794
Target:  5'- uUGUCGGCAUuGCCgcgcUCGGCAgcauucUCGu -3'
miRNA:   3'- -ACGGCCGUAuUGGa---AGCUGUau----AGCu -5'
12449 5' -49.6 NC_003324.1 + 34222 0.66 0.952794
Target:  5'- gUGCCGGUcccUGACCUgUC-ACcgGUCGAc -3'
miRNA:   3'- -ACGGCCGu--AUUGGA-AGcUGuaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 19098 0.66 0.947689
Target:  5'- cGCucgCGGCAUccUCUUCGGCAUugcgcuuGUCGAu -3'
miRNA:   3'- aCG---GCCGUAuuGGAAGCUGUA-------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14812 0.66 0.94325
Target:  5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3'
miRNA:   3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 33752 0.66 0.94325
Target:  5'- uUGgCGGCAgcGCa---GGCGUAUCGAg -3'
miRNA:   3'- -ACgGCCGUauUGgaagCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 44092 0.67 0.938038
Target:  5'- cGCuCGGCAUGAUCccggCGGCAgc-CGAg -3'
miRNA:   3'- aCG-GCCGUAUUGGaa--GCUGUauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 35389 0.67 0.938038
Target:  5'- aGCCGGCGcAAuCCgcCGGCGcgAUCGGa -3'
miRNA:   3'- aCGGCCGUaUU-GGaaGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 6353 0.67 0.938038
Target:  5'- aGCC-GCAUGaucucgcucGCCUUgGGCAUGUCu- -3'
miRNA:   3'- aCGGcCGUAU---------UGGAAgCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 29214 0.67 0.93253
Target:  5'- uUGgCGGCAcguCUcaggUCGAUAUGUCGAa -3'
miRNA:   3'- -ACgGCCGUauuGGa---AGCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 26114 0.67 0.926723
Target:  5'- cGCCGGCA-GACCggUGACGccAUUGGc -3'
miRNA:   3'- aCGGCCGUaUUGGaaGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 23790 0.67 0.926723
Target:  5'- aGCCGGCGgacAUCgaggcagUCGACA--UCGAu -3'
miRNA:   3'- aCGGCCGUau-UGGa------AGCUGUauAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.