miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12449 5' -49.6 NC_003324.1 + 30142 0.68 0.877811
Target:  5'- gGCCGGUGUcgcGACCggCGGCGUGaUGGg -3'
miRNA:   3'- aCGGCCGUA---UUGGaaGCUGUAUaGCU- -5'
12449 5' -49.6 NC_003324.1 + 39053 0.68 0.893233
Target:  5'- cGCagGGCAUGAUCUucaucgaaUCGACGgccaaggGUCGAg -3'
miRNA:   3'- aCGg-CCGUAUUGGA--------AGCUGUa------UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21983 0.68 0.899803
Target:  5'- aGCgCGGCAUccAGCUUguauucaUCGACcUGUCGAc -3'
miRNA:   3'- aCG-GCCGUA--UUGGA-------AGCUGuAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 21868 0.68 0.900518
Target:  5'- cGgCGGCcuUGGCCUucuucggggUCGACAgGUCGAu -3'
miRNA:   3'- aCgGCCGu-AUUGGA---------AGCUGUaUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14451 0.68 0.906826
Target:  5'- aUGCCGGCGUccaagcaucggcgGACCUUgcUGGCAccGUCGc -3'
miRNA:   3'- -ACGGCCGUA-------------UUGGAA--GCUGUa-UAGCu -5'
12449 5' -49.6 NC_003324.1 + 21298 0.68 0.907513
Target:  5'- cGCCGuC---GCCUUCGGCAgcUCGAa -3'
miRNA:   3'- aCGGCcGuauUGGAAGCUGUauAGCU- -5'
12449 5' -49.6 NC_003324.1 + 2504 0.68 0.907513
Target:  5'- cGCCGGCGUcggcGGCUUcaucaUCGGCGUuggCGGu -3'
miRNA:   3'- aCGGCCGUA----UUGGA-----AGCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 16302 0.68 0.907513
Target:  5'- cGUCGGCAcGGCCUgccccgUCGcgGUAUCGAc -3'
miRNA:   3'- aCGGCCGUaUUGGA------AGCugUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 2241 0.67 0.914213
Target:  5'- cUGUCGGCAUAuCCUUCGuaaugAUCa- -3'
miRNA:   3'- -ACGGCCGUAUuGGAAGCugua-UAGcu -5'
12449 5' -49.6 NC_003324.1 + 31780 0.67 0.920617
Target:  5'- cUGCCGGCcucuucgGGCCcguaUUCGGCAacGUCGGc -3'
miRNA:   3'- -ACGGCCGua-----UUGG----AAGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 48690 0.67 0.920617
Target:  5'- aUGCgGGCGccGACCU---GCGUGUCGAu -3'
miRNA:   3'- -ACGgCCGUa-UUGGAagcUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 45133 0.67 0.926126
Target:  5'- cUGCCGGCGUAucaacaacgauguGCCUggCG-CGU-UCGAa -3'
miRNA:   3'- -ACGGCCGUAU-------------UGGAa-GCuGUAuAGCU- -5'
12449 5' -49.6 NC_003324.1 + 23790 0.67 0.926723
Target:  5'- aGCCGGCGgacAUCgaggcagUCGACA--UCGAu -3'
miRNA:   3'- aCGGCCGUau-UGGa------AGCUGUauAGCU- -5'
12449 5' -49.6 NC_003324.1 + 26114 0.67 0.926723
Target:  5'- cGCCGGCA-GACCggUGACGccAUUGGc -3'
miRNA:   3'- aCGGCCGUaUUGGaaGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 29214 0.67 0.93253
Target:  5'- uUGgCGGCAcguCUcaggUCGAUAUGUCGAa -3'
miRNA:   3'- -ACgGCCGUauuGGa---AGCUGUAUAGCU- -5'
12449 5' -49.6 NC_003324.1 + 6353 0.67 0.938038
Target:  5'- aGCC-GCAUGaucucgcucGCCUUgGGCAUGUCu- -3'
miRNA:   3'- aCGGcCGUAU---------UGGAAgCUGUAUAGcu -5'
12449 5' -49.6 NC_003324.1 + 44092 0.67 0.938038
Target:  5'- cGCuCGGCAUGAUCccggCGGCAgc-CGAg -3'
miRNA:   3'- aCG-GCCGUAUUGGaa--GCUGUauaGCU- -5'
12449 5' -49.6 NC_003324.1 + 35389 0.67 0.938038
Target:  5'- aGCCGGCGcAAuCCgcCGGCGcgAUCGGa -3'
miRNA:   3'- aCGGCCGUaUU-GGaaGCUGUa-UAGCU- -5'
12449 5' -49.6 NC_003324.1 + 14812 0.66 0.94325
Target:  5'- gGCCGGCAUcggcagcuuCCUgggCGGCAUcggCGGa -3'
miRNA:   3'- aCGGCCGUAuu-------GGAa--GCUGUAua-GCU- -5'
12449 5' -49.6 NC_003324.1 + 33752 0.66 0.94325
Target:  5'- uUGgCGGCAgcGCa---GGCGUAUCGAg -3'
miRNA:   3'- -ACgGCCGUauUGgaagCUGUAUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.