miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 19527 0.67 0.533707
Target:  5'- -aGGCGUCCAucagccgcuuCACGCGCAuauaCuCGCCg -3'
miRNA:   3'- agCCGCAGGU----------GUGCGUGUca--GcGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30653 0.67 0.52345
Target:  5'- cCGaCG-CCACGgagauagcUGCGCGGaUCGCGCCa -3'
miRNA:   3'- aGCcGCaGGUGU--------GCGUGUC-AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23535 0.67 0.52345
Target:  5'- aUCGGUGccCCACAgCGUggcgGCGGgCGCGCUc -3'
miRNA:   3'- -AGCCGCa-GGUGU-GCG----UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 42917 0.67 0.52345
Target:  5'- -gGGCGaCCAUugGC--GGUCacuGCGCCg -3'
miRNA:   3'- agCCGCaGGUGugCGugUCAG---CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 35853 0.67 0.52345
Target:  5'- uUCGaccuGCG-CCugGCGaACAGUggCGCGCCa -3'
miRNA:   3'- -AGC----CGCaGGugUGCgUGUCA--GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30758 0.67 0.52345
Target:  5'- aCGGaag-CACGgGCGCGGUCcuGCGCCg -3'
miRNA:   3'- aGCCgcagGUGUgCGUGUCAG--CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 29990 0.67 0.513269
Target:  5'- gCGcCGUCCAgCAUGgccaGCAG-CGCGCCg -3'
miRNA:   3'- aGCcGCAGGU-GUGCg---UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 15226 0.67 0.513269
Target:  5'- aUCGGCGgcgagCCuuuuCACGUggcGCcguGUCGaCGCCg -3'
miRNA:   3'- -AGCCGCa----GGu---GUGCG---UGu--CAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 18805 0.67 0.513269
Target:  5'- gCGG-GUCCAUgGCGCGgcgaaGGUCGgCGCCa -3'
miRNA:   3'- aGCCgCAGGUG-UGCGUg----UCAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 2709 0.67 0.5072
Target:  5'- gUCGGCGgcggcagucUCCaagcgauagccgaucGCGCGCccACAGUgGCGCa -3'
miRNA:   3'- -AGCCGC---------AGG---------------UGUGCG--UGUCAgCGCGg -5'
12451 3' -58.6 NC_003324.1 + 42403 0.67 0.49316
Target:  5'- gUCGcGgGUCCGCAacaGCGCca--GCGCCa -3'
miRNA:   3'- -AGC-CgCAGGUGUg--CGUGucagCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 7203 0.67 0.483241
Target:  5'- aUGGCGUCCcuuugACAcccCGCACuGUCGCuugGCUc -3'
miRNA:   3'- aGCCGCAGG-----UGU---GCGUGuCAGCG---CGG- -5'
12451 3' -58.6 NC_003324.1 + 30262 0.68 0.454085
Target:  5'- aUCGGCGaugaugcgggCCAag-GCACGGUCGCccaaGCCg -3'
miRNA:   3'- -AGCCGCa---------GGUgugCGUGUCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 23167 0.68 0.447419
Target:  5'- cCGGCGcCCACGguauggucggcgaGCGCGGUaccgcucugcaucgUGCGCCa -3'
miRNA:   3'- aGCCGCaGGUGUg------------CGUGUCA--------------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 11717 0.68 0.444579
Target:  5'- aUCGGCGUcagaCCGCcgucguucaaGCGCACGuucaUCGCuGCCg -3'
miRNA:   3'- -AGCCGCA----GGUG----------UGCGUGUc---AGCG-CGG- -5'
12451 3' -58.6 NC_003324.1 + 19384 0.68 0.444579
Target:  5'- aUCGaCG-CCG-GCGCGC-GUCGCGCCg -3'
miRNA:   3'- -AGCcGCaGGUgUGCGUGuCAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 17286 0.68 0.438929
Target:  5'- cUCGGCGcUCAagaACGCcgaaagccgcguccgACAGaCGCGCCa -3'
miRNA:   3'- -AGCCGCaGGUg--UGCG---------------UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 42702 0.69 0.41675
Target:  5'- cCGGCG-CCGCGCGaugacuauaaGCAGacgaaguaUCGCGUCa -3'
miRNA:   3'- aGCCGCaGGUGUGCg---------UGUC--------AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 25175 0.69 0.407713
Target:  5'- cCGGCGccaacaUCCAgACGC-CAGUCGgGUUu -3'
miRNA:   3'- aGCCGC------AGGUgUGCGuGUCAGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 42283 0.69 0.390011
Target:  5'- gCGG-GUCgGCaACGCugAGU-GCGCCg -3'
miRNA:   3'- aGCCgCAGgUG-UGCGugUCAgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.