miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 21825 0.66 0.569071
Target:  5'- cCGuCGUCCGCcuucugcaucaguuCGCGCAGcCGgGCCu -3'
miRNA:   3'- aGCcGCAGGUGu-------------GCGUGUCaGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 23167 0.68 0.447419
Target:  5'- cCGGCGcCCACGguauggucggcgaGCGCGGUaccgcucugcaucgUGCGCCa -3'
miRNA:   3'- aGCCGCaGGUGUg------------CGUGUCA--------------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23406 0.66 0.564876
Target:  5'- cUCGGCuuucucGUUgGC-CGCGuCGGUgGCGCCc -3'
miRNA:   3'- -AGCCG------CAGgUGuGCGU-GUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23535 0.67 0.52345
Target:  5'- aUCGGUGccCCACAgCGUggcgGCGGgCGCGCUc -3'
miRNA:   3'- -AGCCGCa-GGUGU-GCG----UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23899 0.67 0.533707
Target:  5'- aUC-GCGUCCGCAgGUuuGCcGUagaGCGCCg -3'
miRNA:   3'- -AGcCGCAGGUGUgCG--UGuCAg--CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 24081 0.7 0.36442
Target:  5'- cCGGUGcgCUGCGC-CACGGUgGCGCUg -3'
miRNA:   3'- aGCCGCa-GGUGUGcGUGUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 24798 0.66 0.596502
Target:  5'- cCGGCGUUCuugaggaagGCAUuguucgGCagGCGGaUCGCGCCg -3'
miRNA:   3'- aGCCGCAGG---------UGUG------CG--UGUC-AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 25175 0.69 0.407713
Target:  5'- cCGGCGccaacaUCCAgACGC-CAGUCGgGUUu -3'
miRNA:   3'- aGCCGC------AGGUgUGCGuGUCAGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 26052 0.7 0.324412
Target:  5'- cCGGCGcUCUAgcuCAaGCGCGGcuUCGCGCCa -3'
miRNA:   3'- aGCCGC-AGGU---GUgCGUGUC--AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 26104 0.7 0.327489
Target:  5'- cCGGUGacgCCAUugGCGCgcucagucaccccgaAGUCGgGCCu -3'
miRNA:   3'- aGCCGCa--GGUGugCGUG---------------UCAGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 26826 0.66 0.596502
Target:  5'- uUUGGCG-CCGCucCGCugAGugccucgucgaUCGcCGCCa -3'
miRNA:   3'- -AGCCGCaGGUGu-GCGugUC-----------AGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 26892 0.73 0.242046
Target:  5'- gCGGCG-CCAaagccagccaaGCGCACGGcCGCGUCu -3'
miRNA:   3'- aGCCGCaGGUg----------UGCGUGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 27103 0.66 0.596502
Target:  5'- cUGGCGcagCACACcaGCGCGGUCGCucucgcucuugaGCCc -3'
miRNA:   3'- aGCCGCag-GUGUG--CGUGUCAGCG------------CGG- -5'
12451 3' -58.6 NC_003324.1 + 28269 0.66 0.585921
Target:  5'- aUCGGUGgaagCUACAucgcuUGCGCGuUCGgCGCCg -3'
miRNA:   3'- -AGCCGCa---GGUGU-----GCGUGUcAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 29792 1.12 0.000337
Target:  5'- cUCGGCGUCCACACGCACAGUCGCGCCa -3'
miRNA:   3'- -AGCCGCAGGUGUGCGUGUCAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 29990 0.67 0.513269
Target:  5'- gCGcCGUCCAgCAUGgccaGCAG-CGCGCCg -3'
miRNA:   3'- aGCcGCAGGU-GUGCg---UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30262 0.68 0.454085
Target:  5'- aUCGGCGaugaugcgggCCAag-GCACGGUCGCccaaGCCg -3'
miRNA:   3'- -AGCCGCa---------GGUgugCGUGUCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 30653 0.67 0.52345
Target:  5'- cCGaCG-CCACGgagauagcUGCGCGGaUCGCGCCa -3'
miRNA:   3'- aGCcGCaGGUGU--------GCGUGUC-AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 30758 0.67 0.52345
Target:  5'- aCGGaag-CACGgGCGCGGUCcuGCGCCg -3'
miRNA:   3'- aGCCgcagGUGUgCGUGUCAG--CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 31044 0.66 0.597561
Target:  5'- gUCGGCGUUcaacuccugCugACGCGCugcgacggccugauuGUCcGUGCCg -3'
miRNA:   3'- -AGCCGCAG---------GugUGCGUGu--------------CAG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.