miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 1543 0.73 0.230143
Target:  5'- aUGGCGgaaaUCCGCGcCGgAUAcGUCGCGCCg -3'
miRNA:   3'- aGCCGC----AGGUGU-GCgUGU-CAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 2709 0.67 0.5072
Target:  5'- gUCGGCGgcggcagucUCCaagcgauagccgaucGCGCGCccACAGUgGCGCa -3'
miRNA:   3'- -AGCCGC---------AGG---------------UGUGCG--UGUCAgCGCGg -5'
12451 3' -58.6 NC_003324.1 + 3525 0.66 0.585921
Target:  5'- aUCGGCGUCaugggagcggaACcggcugcaaacgGCGCuuCGGUgGCGCCc -3'
miRNA:   3'- -AGCCGCAGg----------UG------------UGCGu-GUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 5496 0.74 0.202538
Target:  5'- cUCGGCG-CCGCAgGUGCGG--GCGCCa -3'
miRNA:   3'- -AGCCGCaGGUGUgCGUGUCagCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 7203 0.67 0.483241
Target:  5'- aUGGCGUCCcuuugACAcccCGCACuGUCGCuugGCUc -3'
miRNA:   3'- aGCCGCAGG-----UGU---GCGUGuCAGCG---CGG- -5'
12451 3' -58.6 NC_003324.1 + 11717 0.68 0.444579
Target:  5'- aUCGGCGUcagaCCGCcgucguucaaGCGCACGuucaUCGCuGCCg -3'
miRNA:   3'- -AGCCGCA----GGUG----------UGCGUGUc---AGCG-CGG- -5'
12451 3' -58.6 NC_003324.1 + 14467 0.71 0.302021
Target:  5'- aUCGGCGgaCCuuGCugGCACcGUCGCggaaGCCg -3'
miRNA:   3'- -AGCCGCa-GG--UGugCGUGuCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 14477 0.75 0.17325
Target:  5'- -aGGCGUuuGCGCGCuCGGUUGCGgCg -3'
miRNA:   3'- agCCGCAggUGUGCGuGUCAGCGCgG- -5'
12451 3' -58.6 NC_003324.1 + 15127 0.73 0.242046
Target:  5'- cUCGGCGUCgACACgGCGCcacgugaaaaGGcUCGcCGCCg -3'
miRNA:   3'- -AGCCGCAGgUGUG-CGUG----------UC-AGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 15226 0.67 0.513269
Target:  5'- aUCGGCGgcgagCCuuuuCACGUggcGCcguGUCGaCGCCg -3'
miRNA:   3'- -AGCCGCa----GGu---GUGCG---UGu--CAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 15439 0.66 0.585921
Target:  5'- uUCaGCGUCCuCGCGCGCA-UCGaGCa -3'
miRNA:   3'- -AGcCGCAGGuGUGCGUGUcAGCgCGg -5'
12451 3' -58.6 NC_003324.1 + 17286 0.68 0.438929
Target:  5'- cUCGGCGcUCAagaACGCcgaaagccgcguccgACAGaCGCGCCa -3'
miRNA:   3'- -AGCCGCaGGUg--UGCG---------------UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18133 0.66 0.585921
Target:  5'- gCGGCGUgUAUucgACGC-CGGUUuCGCCg -3'
miRNA:   3'- aGCCGCAgGUG---UGCGuGUCAGcGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18210 0.71 0.294827
Target:  5'- cCGGCGUCgaaUACACGcCGCuG-CGCGCUa -3'
miRNA:   3'- aGCCGCAG---GUGUGC-GUGuCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18284 0.67 0.533707
Target:  5'- aUCGGCcgaCGCGCGgGCAaUCGCuGCCc -3'
miRNA:   3'- -AGCCGcagGUGUGCgUGUcAGCG-CGG- -5'
12451 3' -58.6 NC_003324.1 + 18805 0.67 0.513269
Target:  5'- gCGG-GUCCAUgGCGCGgcgaaGGUCGgCGCCa -3'
miRNA:   3'- aGCCgCAGGUG-UGCGUg----UCAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 19384 0.68 0.444579
Target:  5'- aUCGaCG-CCG-GCGCGC-GUCGCGCCg -3'
miRNA:   3'- -AGCcGCaGGUgUGCGUGuCAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 19466 0.66 0.575377
Target:  5'- aCGGCG-CgACGCGCGCcggcGUCGauCCa -3'
miRNA:   3'- aGCCGCaGgUGUGCGUGu---CAGCgcGG- -5'
12451 3' -58.6 NC_003324.1 + 19527 0.67 0.533707
Target:  5'- -aGGCGUCCAucagccgcuuCACGCGCAuauaCuCGCCg -3'
miRNA:   3'- agCCGCAGGU----------GUGCGUGUca--GcGCGG- -5'
12451 3' -58.6 NC_003324.1 + 20266 0.7 0.36442
Target:  5'- cCGGCGUCaUACGgGCuCAG-CGgGCCa -3'
miRNA:   3'- aGCCGCAG-GUGUgCGuGUCaGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.