miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 31044 0.66 0.597561
Target:  5'- gUCGGCGUUcaacuccugCugACGCGCugcgacggccugauuGUCcGUGCCg -3'
miRNA:   3'- -AGCCGCAG---------GugUGCGUGu--------------CAG-CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 3525 0.66 0.585921
Target:  5'- aUCGGCGUCaugggagcggaACcggcugcaaacgGCGCuuCGGUgGCGCCc -3'
miRNA:   3'- -AGCCGCAGg----------UG------------UGCGu-GUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 24798 0.66 0.596502
Target:  5'- cCGGCGUUCuugaggaagGCAUuguucgGCagGCGGaUCGCGCCg -3'
miRNA:   3'- aGCCGCAGG---------UGUG------CG--UGUC-AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 26826 0.66 0.596502
Target:  5'- uUUGGCG-CCGCucCGCugAGugccucgucgaUCGcCGCCa -3'
miRNA:   3'- -AGCCGCaGGUGu-GCGugUC-----------AGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 27103 0.66 0.596502
Target:  5'- cUGGCGcagCACACcaGCGCGGUCGCucucgcucuugaGCCc -3'
miRNA:   3'- aGCCGCag-GUGUG--CGUGUCAGCG------------CGG- -5'
12451 3' -58.6 NC_003324.1 + 50744 0.66 0.585921
Target:  5'- aUUGGCGcUUCGCAaccgucgcaGCGCAGauguucgUGCGCCu -3'
miRNA:   3'- -AGCCGC-AGGUGUg--------CGUGUCa------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 15439 0.66 0.585921
Target:  5'- uUCaGCGUCCuCGCGCGCA-UCGaGCa -3'
miRNA:   3'- -AGcCGCAGGuGUGCGUGUcAGCgCGg -5'
12451 3' -58.6 NC_003324.1 + 40334 0.66 0.564876
Target:  5'- cCGGa--CCGCACGCaaggcgGCAGUCGagcgggaGCCa -3'
miRNA:   3'- aGCCgcaGGUGUGCG------UGUCAGCg------CGG- -5'
12451 3' -58.6 NC_003324.1 + 47747 0.66 0.554427
Target:  5'- aCGGaacuGUCCA-GCGCAcCGG-CGUGCCa -3'
miRNA:   3'- aGCCg---CAGGUgUGCGU-GUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 28269 0.66 0.585921
Target:  5'- aUCGGUGgaagCUACAucgcuUGCGCGuUCGgCGCCg -3'
miRNA:   3'- -AGCCGCa---GGUGU-----GCGUGUcAGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 18133 0.66 0.585921
Target:  5'- gCGGCGUgUAUucgACGC-CGGUUuCGCCg -3'
miRNA:   3'- aGCCGCAgGUG---UGCGuGUCAGcGCGG- -5'
12451 3' -58.6 NC_003324.1 + 54175 0.66 0.582754
Target:  5'- gUCGGCGUguugcagucugugaCCACGCaGCGCgAGgcagaGCGCg -3'
miRNA:   3'- -AGCCGCA--------------GGUGUG-CGUG-UCag---CGCGg -5'
12451 3' -58.6 NC_003324.1 + 21825 0.66 0.569071
Target:  5'- cCGuCGUCCGCcuucugcaucaguuCGCGCAGcCGgGCCu -3'
miRNA:   3'- aGCcGCAGGUGu-------------GCGUGUCaGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 23406 0.66 0.564876
Target:  5'- cUCGGCuuucucGUUgGC-CGCGuCGGUgGCGCCc -3'
miRNA:   3'- -AGCCG------CAGgUGuGCGU-GUCAgCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 34639 0.66 0.554427
Target:  5'- cUCGGCGUCCAgCAUGUcgaagaGCAc-UGUGCCc -3'
miRNA:   3'- -AGCCGCAGGU-GUGCG------UGUcaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 50622 0.66 0.554427
Target:  5'- cUCGGCGUCgaGCAgGUcaacGCGGgugcuggcugCGUGCCa -3'
miRNA:   3'- -AGCCGCAGg-UGUgCG----UGUCa---------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 19466 0.66 0.575377
Target:  5'- aCGGCG-CgACGCGCGCcggcGUCGauCCa -3'
miRNA:   3'- aGCCGCaGgUGUGCGUGu---CAGCgcGG- -5'
12451 3' -58.6 NC_003324.1 + 23535 0.67 0.52345
Target:  5'- aUCGGUGccCCACAgCGUggcgGCGGgCGCGCUc -3'
miRNA:   3'- -AGCCGCa-GGUGU-GCG----UGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 23899 0.67 0.533707
Target:  5'- aUC-GCGUCCGCAgGUuuGCcGUagaGCGCCg -3'
miRNA:   3'- -AGcCGCAGGUGUgCG--UGuCAg--CGCGG- -5'
12451 3' -58.6 NC_003324.1 + 18284 0.67 0.533707
Target:  5'- aUCGGCcgaCGCGCGgGCAaUCGCuGCCc -3'
miRNA:   3'- -AGCCGcagGUGUGCgUGUcAGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.