miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12451 3' -58.6 NC_003324.1 + 29792 1.12 0.000337
Target:  5'- cUCGGCGUCCACACGCACAGUCGCGCCa -3'
miRNA:   3'- -AGCCGCAGGUGUGCGUGUCAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 52168 0.76 0.140101
Target:  5'- gUCGGCGUCCuuACG-GCAGgccUCGUGCCa -3'
miRNA:   3'- -AGCCGCAGGugUGCgUGUC---AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 14477 0.75 0.17325
Target:  5'- -aGGCGUuuGCGCGCuCGGUUGCGgCg -3'
miRNA:   3'- agCCGCAggUGUGCGuGUCAGCGCgG- -5'
12451 3' -58.6 NC_003324.1 + 5496 0.74 0.202538
Target:  5'- cUCGGCG-CCGCAgGUGCGG--GCGCCa -3'
miRNA:   3'- -AGCCGCaGGUGUgCGUGUCagCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 1543 0.73 0.230143
Target:  5'- aUGGCGgaaaUCCGCGcCGgAUAcGUCGCGCCg -3'
miRNA:   3'- aGCCGC----AGGUGU-GCgUGU-CAGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 31618 0.73 0.242046
Target:  5'- cUGGCGUUgGCAUGCACccacUCGCGCa -3'
miRNA:   3'- aGCCGCAGgUGUGCGUGuc--AGCGCGg -5'
12451 3' -58.6 NC_003324.1 + 26892 0.73 0.242046
Target:  5'- gCGGCG-CCAaagccagccaaGCGCACGGcCGCGUCu -3'
miRNA:   3'- aGCCGCaGGUg----------UGCGUGUCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 15127 0.73 0.242046
Target:  5'- cUCGGCGUCgACACgGCGCcacgugaaaaGGcUCGcCGCCg -3'
miRNA:   3'- -AGCCGCAGgUGUG-CGUG----------UC-AGC-GCGG- -5'
12451 3' -58.6 NC_003324.1 + 18210 0.71 0.294827
Target:  5'- cCGGCGUCgaaUACACGcCGCuG-CGCGCUa -3'
miRNA:   3'- aGCCGCAG---GUGUGC-GUGuCaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 35394 0.71 0.294827
Target:  5'- cUCGGcCG-CCGCGCGCAUGGUUuccuCGCCc -3'
miRNA:   3'- -AGCC-GCaGGUGUGCGUGUCAGc---GCGG- -5'
12451 3' -58.6 NC_003324.1 + 40047 0.71 0.294827
Target:  5'- gUCGGcCGUCCAC-CGU--AGUUGCGCg -3'
miRNA:   3'- -AGCC-GCAGGUGuGCGugUCAGCGCGg -5'
12451 3' -58.6 NC_003324.1 + 14467 0.71 0.302021
Target:  5'- aUCGGCGgaCCuuGCugGCACcGUCGCggaaGCCg -3'
miRNA:   3'- -AGCCGCa-GG--UGugCGUGuCAGCG----CGG- -5'
12451 3' -58.6 NC_003324.1 + 37993 0.71 0.319837
Target:  5'- -aGGCGgCCAUgccggagcgguugcgGCGCACGGggCGCGUCa -3'
miRNA:   3'- agCCGCaGGUG---------------UGCGUGUCa-GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 26052 0.7 0.324412
Target:  5'- cCGGCGcUCUAgcuCAaGCGCGGcuUCGCGCCa -3'
miRNA:   3'- aGCCGC-AGGU---GUgCGUGUC--AGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 26104 0.7 0.327489
Target:  5'- cCGGUGacgCCAUugGCGCgcucagucaccccgaAGUCGgGCCu -3'
miRNA:   3'- aGCCGCa--GGUGugCGUG---------------UCAGCgCGG- -5'
12451 3' -58.6 NC_003324.1 + 41767 0.7 0.332146
Target:  5'- aUUGGCGcaucgcuaCCGUugGCACAGUgCGCGUCg -3'
miRNA:   3'- -AGCCGCa-------GGUGugCGUGUCA-GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 34150 0.7 0.332146
Target:  5'- -gGGCGgagCCGCugGCAUuGg-GCGCCg -3'
miRNA:   3'- agCCGCa--GGUGugCGUGuCagCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 54018 0.7 0.348016
Target:  5'- gUCGGCGUCUuucugcaggcgGCgaaGCGCACuuGcCGCGCUg -3'
miRNA:   3'- -AGCCGCAGG-----------UG---UGCGUGu-CaGCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 41657 0.7 0.353697
Target:  5'- gUCGGCGgcgcgacguagCCgACGCGCACuGUgccaacgguagcgaUGCGCCa -3'
miRNA:   3'- -AGCCGCa----------GG-UGUGCGUGuCA--------------GCGCGG- -5'
12451 3' -58.6 NC_003324.1 + 24081 0.7 0.36442
Target:  5'- cCGGUGcgCUGCGC-CACGGUgGCGCUg -3'
miRNA:   3'- aGCCGCa-GGUGUGcGUGUCAgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.