Results 1 - 20 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 54175 | 0.66 | 0.582754 |
Target: 5'- gUCGGCGUguugcagucugugaCCACGCaGCGCgAGgcagaGCGCg -3' miRNA: 3'- -AGCCGCA--------------GGUGUG-CGUG-UCag---CGCGg -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 54018 | 0.7 | 0.348016 |
Target: 5'- gUCGGCGUCUuucugcaggcgGCgaaGCGCACuuGcCGCGCUg -3' miRNA: 3'- -AGCCGCAGG-----------UG---UGCGUGu-CaGCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 53528 | 0.69 | 0.37282 |
Target: 5'- cCGGCGUUgAUACGguCuGUCGUGUa -3' miRNA: 3'- aGCCGCAGgUGUGCguGuCAGCGCGg -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 52168 | 0.76 | 0.140101 |
Target: 5'- gUCGGCGUCCuuACG-GCAGgccUCGUGCCa -3' miRNA: 3'- -AGCCGCAGGugUGCgUGUC---AGCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 50744 | 0.66 | 0.585921 |
Target: 5'- aUUGGCGcUUCGCAaccgucgcaGCGCAGauguucgUGCGCCu -3' miRNA: 3'- -AGCCGC-AGGUGUg--------CGUGUCa------GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 50622 | 0.66 | 0.554427 |
Target: 5'- cUCGGCGUCgaGCAgGUcaacGCGGgugcuggcugCGUGCCa -3' miRNA: 3'- -AGCCGCAGg-UGUgCG----UGUCa---------GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 47955 | 0.69 | 0.381351 |
Target: 5'- uUCGGCaaagGUCCugACGCcggucagguACGGUUucagcggcaGCGCCg -3' miRNA: 3'- -AGCCG----CAGGugUGCG---------UGUCAG---------CGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 47747 | 0.66 | 0.554427 |
Target: 5'- aCGGaacuGUCCA-GCGCAcCGG-CGUGCCa -3' miRNA: 3'- aGCCg---CAGGUgUGCGU-GUCaGCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 42917 | 0.67 | 0.52345 |
Target: 5'- -gGGCGaCCAUugGC--GGUCacuGCGCCg -3' miRNA: 3'- agCCGCaGGUGugCGugUCAG---CGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 42702 | 0.69 | 0.41675 |
Target: 5'- cCGGCG-CCGCGCGaugacuauaaGCAGacgaaguaUCGCGUCa -3' miRNA: 3'- aGCCGCaGGUGUGCg---------UGUC--------AGCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 42403 | 0.67 | 0.49316 |
Target: 5'- gUCGcGgGUCCGCAacaGCGCca--GCGCCa -3' miRNA: 3'- -AGC-CgCAGGUGUg--CGUGucagCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 42283 | 0.69 | 0.390011 |
Target: 5'- gCGG-GUCgGCaACGCugAGU-GCGCCg -3' miRNA: 3'- aGCCgCAGgUG-UGCGugUCAgCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 41767 | 0.7 | 0.332146 |
Target: 5'- aUUGGCGcaucgcuaCCGUugGCACAGUgCGCGUCg -3' miRNA: 3'- -AGCCGCa-------GGUGugCGUGUCA-GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 41657 | 0.7 | 0.353697 |
Target: 5'- gUCGGCGgcgcgacguagCCgACGCGCACuGUgccaacgguagcgaUGCGCCa -3' miRNA: 3'- -AGCCGCa----------GG-UGUGCGUGuCA--------------GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 40334 | 0.66 | 0.564876 |
Target: 5'- cCGGa--CCGCACGCaaggcgGCAGUCGagcgggaGCCa -3' miRNA: 3'- aGCCgcaGGUGUGCG------UGUCAGCg------CGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 40047 | 0.71 | 0.294827 |
Target: 5'- gUCGGcCGUCCAC-CGU--AGUUGCGCg -3' miRNA: 3'- -AGCC-GCAGGUGuGCGugUCAGCGCGg -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 38104 | 0.67 | 0.533707 |
Target: 5'- gUCGGCGgaaugUugACGCGCcccgUGCGCCg -3' miRNA: 3'- -AGCCGCag---GugUGCGUGuca-GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 37993 | 0.71 | 0.319837 |
Target: 5'- -aGGCGgCCAUgccggagcgguugcgGCGCACGGggCGCGUCa -3' miRNA: 3'- agCCGCaGGUG---------------UGCGUGUCa-GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 35853 | 0.67 | 0.52345 |
Target: 5'- uUCGaccuGCG-CCugGCGaACAGUggCGCGCCa -3' miRNA: 3'- -AGC----CGCaGGugUGCgUGUCA--GCGCGG- -5' |
|||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 35394 | 0.71 | 0.294827 |
Target: 5'- cUCGGcCG-CCGCGCGCAUGGUUuccuCGCCc -3' miRNA: 3'- -AGCC-GCaGGUGUGCGUGUCAGc---GCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home