miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12454 3' -64.7 NC_003324.1 + 41818 0.66 0.286836
Target:  5'- gUUGGGGGUGCCGugGCgUGaucGCa -3'
miRNA:   3'- uGACCCCCGCGGUugCGgACggcCGg -5'
12454 3' -64.7 NC_003324.1 + 46742 0.66 0.280107
Target:  5'- aGCacGGGGCGCCGAgGUgUGCCccgcGCUa -3'
miRNA:   3'- -UGacCCCCGCGGUUgCGgACGGc---CGG- -5'
12454 3' -64.7 NC_003324.1 + 32449 0.67 0.254443
Target:  5'- cGCUGGcaacGGCaGCCAugcccucguCGCCUucGCCGGCa -3'
miRNA:   3'- -UGACCc---CCG-CGGUu--------GCGGA--CGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 7631 0.67 0.254443
Target:  5'- --cGGaGGCGU--GCGCCuUGCUGGCCc -3'
miRNA:   3'- ugaCCcCCGCGguUGCGG-ACGGCCGG- -5'
12454 3' -64.7 NC_003324.1 + 48724 0.67 0.247732
Target:  5'- --aGGGcgccaaccgcgucGGCGCCAGCaGgCUGCaGGCCa -3'
miRNA:   3'- ugaCCC-------------CCGCGGUUG-CgGACGgCCGG- -5'
12454 3' -64.7 NC_003324.1 + 30310 0.67 0.242351
Target:  5'- --cGGuGGCGUCGcucgGCGCgUGCUGGCUg -3'
miRNA:   3'- ugaCCcCCGCGGU----UGCGgACGGCCGG- -5'
12454 3' -64.7 NC_003324.1 + 14570 0.67 0.242351
Target:  5'- -aUGGGucgcGGCcuGCCGGCGCaagcgGCCGGCg -3'
miRNA:   3'- ugACCC----CCG--CGGUUGCGga---CGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 44423 0.67 0.236487
Target:  5'- uGCgGGcaccGGGCGCCGAgacuucgguCGCUgaugGCCGGCg -3'
miRNA:   3'- -UGaCC----CCCGCGGUU---------GCGGa---CGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 14696 0.67 0.236487
Target:  5'- --aGGGccguagcuccGGcCGCCAcgcuaccgccuGCGCC-GCCGGCCg -3'
miRNA:   3'- ugaCCC----------CC-GCGGU-----------UGCGGaCGGCCGG- -5'
12454 3' -64.7 NC_003324.1 + 14423 0.67 0.230174
Target:  5'- -aUGGGGaucaCGCCcggcucuGGCGCCcaUGCCGGCg -3'
miRNA:   3'- ugACCCCc---GCGG-------UUGCGG--ACGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 38919 0.67 0.224558
Target:  5'- aGCUGGuGGGaCGCCGACGaauacgccauggaCCcGCaCGGCg -3'
miRNA:   3'- -UGACC-CCC-GCGGUUGC-------------GGaCG-GCCGg -5'
12454 3' -64.7 NC_003324.1 + 19896 0.68 0.220151
Target:  5'- cCUGGGacacauugcagagcuGGCGCCAACaCCUGUCGuucguccagaaaauGCCg -3'
miRNA:   3'- uGACCC---------------CCGCGGUUGcGGACGGC--------------CGG- -5'
12454 3' -64.7 NC_003324.1 + 16251 0.68 0.219605
Target:  5'- aGCUGcGGugcccgccucGGUGCCAGCgauGCCUgGCgCGGCCc -3'
miRNA:   3'- -UGAC-CC----------CCGCGGUUG---CGGA-CG-GCCGG- -5'
12454 3' -64.7 NC_003324.1 + 10677 0.68 0.20893
Target:  5'- gACUGGGGGacgguuGCCGuUGCCUGCauccGCUg -3'
miRNA:   3'- -UGACCCCCg-----CGGUuGCGGACGgc--CGG- -5'
12454 3' -64.7 NC_003324.1 + 41356 0.68 0.203762
Target:  5'- cGCUGGGGGCgGCuUAAUGaaguaGCCGGCa -3'
miRNA:   3'- -UGACCCCCG-CG-GUUGCgga--CGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 16034 0.68 0.203762
Target:  5'- gACUGGcuGGUGaugaggccaaguUCGACGaCUUGCCGGCCg -3'
miRNA:   3'- -UGACCc-CCGC------------GGUUGC-GGACGGCCGG- -5'
12454 3' -64.7 NC_003324.1 + 51396 0.68 0.202234
Target:  5'- --cGGGcGGauaGUCuuccguaugaucguGACGCCUGCCGGCg -3'
miRNA:   3'- ugaCCC-CCg--CGG--------------UUGCGGACGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 35017 0.69 0.183254
Target:  5'- --aGGGcGGCGCagaugaagagcaggAGCGCCcggcaacguggauccUGCCGGCCg -3'
miRNA:   3'- ugaCCC-CCGCGg-------------UUGCGG---------------ACGGCCGG- -5'
12454 3' -64.7 NC_003324.1 + 26015 0.69 0.179561
Target:  5'- --cGGGGugacugagcGCGCCAAUggcgucaccgGUCUGCCGGCg -3'
miRNA:   3'- ugaCCCC---------CGCGGUUG----------CGGACGGCCGg -5'
12454 3' -64.7 NC_003324.1 + 29880 0.69 0.165867
Target:  5'- gGCaGGGuggauacGGCGCgaucuuCGGCGCgCUGCUGGCCa -3'
miRNA:   3'- -UGaCCC-------CCGCG------GUUGCG-GACGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.