miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 5' -62.4 NC_003324.1 + 23159 0.68 0.248542
Target:  5'- aCGUCUU-GCCGGC-GCCcacgguauggUCGGCGAg -3'
miRNA:   3'- aGCGGAAgCGGCCGuCGG----------AGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 36804 0.68 0.248542
Target:  5'- aUUGCCUcgUCGCCGuaGGCaUCGaGCGAUa -3'
miRNA:   3'- -AGCGGA--AGCGGCcgUCGgAGC-CGCUA- -5'
12456 5' -62.4 NC_003324.1 + 5577 0.67 0.280998
Target:  5'- cCGCCUUCGUCGugcggaaaGCAGUCUUGaGCGu- -3'
miRNA:   3'- aGCGGAAGCGGC--------CGUCGGAGC-CGCua -5'
12456 5' -62.4 NC_003324.1 + 40272 0.68 0.267628
Target:  5'- -aGCgCUUCGUCGGCAuCgCUCGGCuGAUg -3'
miRNA:   3'- agCG-GAAGCGGCCGUcG-GAGCCG-CUA- -5'
12456 5' -62.4 NC_003324.1 + 30327 0.68 0.266973
Target:  5'- aUCGCCgauggUGUCGGCGGUggcgucgCUCGGCGc- -3'
miRNA:   3'- -AGCGGaa---GCGGCCGUCG-------GAGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 42938 0.68 0.251021
Target:  5'- -gGCCg--GCCGGCAGCCUcgaauaccagcaauaCGGCGu- -3'
miRNA:   3'- agCGGaagCGGCCGUCGGA---------------GCCGCua -5'
12456 5' -62.4 NC_003324.1 + 13169 0.68 0.248542
Target:  5'- -gGCUgcgUCGgCGGCGGUCggcggCGGCGGUa -3'
miRNA:   3'- agCGGa--AGCgGCCGUCGGa----GCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 23249 0.69 0.2143
Target:  5'- cUCGCCgaccauaccgugggCGCCGGCAagacguuugccGCCauugcaUCGGCGAUg -3'
miRNA:   3'- -AGCGGaa------------GCGGCCGU-----------CGG------AGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 33368 0.69 0.213756
Target:  5'- uUUGCCUUCGUCGGCcauGUCgaugacuaUGGCGAUg -3'
miRNA:   3'- -AGCGGAAGCGGCCGu--CGGa-------GCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 43496 0.7 0.200025
Target:  5'- uUCGCCgUCGCCGagaccacccacgacuGCGGUCagaUCGGCGGUu -3'
miRNA:   3'- -AGCGGaAGCGGC---------------CGUCGG---AGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 11237 0.67 0.309317
Target:  5'- aCGCUgugcgaGCCGGCcGCCagacCGGCGAa -3'
miRNA:   3'- aGCGGaag---CGGCCGuCGGa---GCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 2606 0.67 0.309317
Target:  5'- gUCGCCUguUCGUCGGUGGCgUcaCGGCu-- -3'
miRNA:   3'- -AGCGGA--AGCGGCCGUCGgA--GCCGcua -5'
12456 5' -62.4 NC_003324.1 + 2505 0.74 0.10198
Target:  5'- cCGCCggCGUCGGCGGCUUCaucaucggcguuGGCGGUg -3'
miRNA:   3'- aGCGGaaGCGGCCGUCGGAG------------CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 26129 0.66 0.372318
Target:  5'- gCGCUUgagcuagagCGCCGGCAGaC-CGGUGAc -3'
miRNA:   3'- aGCGGAa--------GCGGCCGUCgGaGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 16996 0.66 0.371479
Target:  5'- aUCGgUgaCGCUGGCAGCCgccaccuugcaaaUCGGCGc- -3'
miRNA:   3'- -AGCgGaaGCGGCCGUCGG-------------AGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 14669 0.66 0.339761
Target:  5'- cCGCCUgcgcCGCCGGCcGCUUgcgcCGGCa-- -3'
miRNA:   3'- aGCGGAa---GCGGCCGuCGGA----GCCGcua -5'
12456 5' -62.4 NC_003324.1 + 29557 0.66 0.339761
Target:  5'- gCGCCcgacgCGCCcGCAGCCa-GGCGGc -3'
miRNA:   3'- aGCGGaa---GCGGcCGUCGGagCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 52380 0.66 0.339761
Target:  5'- gUCGCagaCGCCGGCcGCCccgaaUCgGGCGGUa -3'
miRNA:   3'- -AGCGgaaGCGGCCGuCGG-----AG-CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 21299 0.66 0.324273
Target:  5'- gCGCCgUCGCCuucGGCAGCUcgaaagccaGGCGGUu -3'
miRNA:   3'- aGCGGaAGCGG---CCGUCGGag-------CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 11016 0.67 0.316729
Target:  5'- -aGCCUUCaccCCGGCGGUgUUGGCa-- -3'
miRNA:   3'- agCGGAAGc--GGCCGUCGgAGCCGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.